RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 MIGA2Q7L4E1 593 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 ZFPM1Q8IX07 1006 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 RHOT2Q8IXI1 618 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 VPS52Q8N1B4 723 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 RAB3IPQ96QF0 476 aaPredicted RBP12.1□□□□□ -0.47
LDLR-208ENST00000558518 NYXQ9GZU5 481 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 GGA1Q9UJY5 639 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 G3BP2Q9UN86 482 aaKnown RBP12.1□□□□□ -0.47
LDLR-208ENST00000558518 ZNF148Q9UQR1 794 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 TRAF3IP3Q9Y228 551 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 ZNF335Q9H4Z2 1342 aaPredicted RBP12.1□□□□□ -0.47
LDLR-208ENST00000558518 CES2O00748 559 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 ZCCHC18P0CG32 403 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 CHRNB2P17787 502 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 ATP5DP30049 168 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 ALDH3A1P30838 453 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 IRX1P78414 480 aaPredicted RBP12.1□□□□□ -0.47
LDLR-208ENST00000558518 MGAT5Q09328 741 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 MIS18BP1Q6P0N0 1132 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 CNBD1Q8NA66 436 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 PCDHB18PQ96TA0 734 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 P2RX7Q99572 595 aaKnown RBP12.1□□□□□ -0.47
LDLR-208ENST00000558518 KIFC3Q9BVG8 833 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 RXFP1Q9HBX9 757 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 TOPORSQ9NS56 1045 aaPredicted RBP12.1□□□□□ -0.47
LDLR-208ENST00000558518 SLC5A4Q9NY91 659 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 PHTF1Q9UMS5 762 aa12.1□□□□□ -0.47
LDLR-208ENST00000558518 R3HDM2Q9Y2K5 976 aaKnown RBP12.1□□□□□ -0.47
LDLR-208ENST00000558518 ESYT2A0FGR8 921 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 O00370 1275 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 HLA-DOAP06340 250 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 PLS3P13797 630 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 PPATQ06203 517 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 BNIP1Q12981 228 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 STRN3Q13033 797 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 FBXO11Q86XK2 927 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 CENPTQ96BT3 561 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 AGPAT3Q9NRZ7 376 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 DAGLAQ9Y4D2 1042 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 SRRM3A6NNA2 597 aaPredicted RBP12.09□□□□□ -0.47
LDLR-208ENST00000558518 KRT10P13645 584 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 ETS1P14921 441 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 JAM2P57087 298 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 PPP2R5EQ16537 467 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 TSNAXIP1Q2TAA8 658 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 TAF1BQ53T94 588 aaPredicted RBP12.09□□□□□ -0.47
LDLR-208ENST00000558518 IZUMO3Q5VZ72 239 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 UCMAQ8WVF2 138 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 TEKT4Q8WW24 435 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 TMEM117Q9H0C3 514 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 HOMER2Q9NSB8 354 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 CACNA1SQ13698 1873 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 ATP4AP20648 1035 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 RPA1P27694 616 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 PPP3CAQ08209 521 aa12.09□□□□□ -0.47
LDLR-208ENST00000558518 NOP9Q86U38 636 aaKnown RBP12.09□□□□□ -0.47
LDLR-208ENST00000558518 MTDHQ86UE4 582 aaKnown RBP12.09□□□□□ -0.47
LDLR-208ENST00000558518 RBM15Q96T37 977 aaKnown RBP eCLIP12.09□□□□□ -0.477e-8■■■■□ 25.4
LDLR-208ENST00000558518 PCNTO95613 3336 aa12.08□□□□□ -0.48
LDLR-208ENST00000558518 HARSP12081 509 aaKnown RBP12.08□□□□□ -0.48
LDLR-208ENST00000558518 PIK3CAP42336 1068 aa12.08□□□□□ -0.48
LDLR-208ENST00000558518 MXI1P50539 228 aa12.08□□□□□ -0.48
LDLR-208ENST00000558518 BFSP1Q12934 665 aa12.08□□□□□ -0.48
LDLR-208ENST00000558518 RBBP5Q15291 538 aaKnown RBP12.08□□□□□ -0.48
LDLR-208ENST00000558518 GBP7Q8N8V2 638 aaPredicted RBP12.08□□□□□ -0.48
LDLR-208ENST00000558518 HIPK4Q8NE63 616 aa12.08□□□□□ -0.48
LDLR-208ENST00000558518 BATF3Q9NR55 127 aa12.08□□□□□ -0.48
LDLR-208ENST00000558518 TXLNGQ9NUQ3 528 aa12.08□□□□□ -0.48
LDLR-208ENST00000558518 NINJ2Q9NZG7 142 aa12.08□□□□□ -0.48
LDLR-208ENST00000558518 USH1CQ9Y6N9 552 aa12.08□□□□□ -0.48
LDLR-208ENST00000558518 CCDC88AQ3V6T2 1871 aa12.08□□□□□ -0.48
LDLR-208ENST00000558518 A0A0A6YYK5 440 aaPredicted RBP12.08□□□□□ -0.48
LDLR-208ENST00000558518 MAP3K13O43283 966 aa12.08□□□□□ -0.48
LDLR-208ENST00000558518 ZBED4O75132 1171 aa12.08□□□□□ -0.48
LDLR-208ENST00000558518 RALAP11233 206 aa12.08□□□□□ -0.48
LDLR-208ENST00000558518 CTNNA2P26232 953 aa12.08□□□□□ -0.48
LDLR-208ENST00000558518 PKN2Q16513 984 aaKnown RBP12.08□□□□□ -0.48
LDLR-208ENST00000558518 P3H1Q32P28 736 aa12.08□□□□□ -0.48
LDLR-208ENST00000558518 RFWD3Q6PCD5 774 aa12.08□□□□□ -0.48
LDLR-208ENST00000558518 SLC30A9Q6PML9 568 aa12.08□□□□□ -0.48
LDLR-208ENST00000558518 TBC1D10AQ9BXI6 508 aa12.08□□□□□ -0.48
LDLR-208ENST00000558518 GPRC5CQ9NQ84 441 aa12.08□□□□□ -0.48
LDLR-208ENST00000558518 IRAK4Q9NWZ3 460 aa12.08□□□□□ -0.48
LDLR-208ENST00000558518 ZFP69BQ9UJL9 534 aa12.08□□□□□ -0.48
LDLR-208ENST00000558518 SMNDC1O75940 238 aaKnown RBP eCLIP12.07□□□□□ -0.48
LDLR-208ENST00000558518 TTC4O95801 387 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 RRM1P23921 792 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 CRELD2Q6UXH1 353 aaPredicted RBP12.07□□□□□ -0.48
LDLR-208ENST00000558518 AMIGO3Q86WK7 504 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 ZBED8Q8IZ13 594 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 EIF1ADQ8N9N8 165 aaKnown RBP12.07□□□□□ -0.48
LDLR-208ENST00000558518 FAM13CQ8NE31 585 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 CKAP2Q8WWK9 683 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 STMN2Q93045 179 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 SMC6Q96SB8 1091 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 TRPM3Q9HCF6 1732 aaPredicted RBP12.07□□□□□ -0.48
LDLR-208ENST00000558518 PITPNM2Q9BZ72 1349 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 hCG_2014768A0A024R1R8 64 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 BTNL10A8MVZ5 291 aa12.07□□□□□ -0.48
LDLR-208ENST00000558518 MIF4GDA9UHW6 222 aaKnown RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms