RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 NAMPTP43490 491 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 HMGN5P82970 282 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 CREMQ03060 361 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 TUSC3Q13454 348 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 TDGQ13569 410 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 HSP90AA2PQ14568 343 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 PPP2R5AQ15172 486 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 NOSTRINQ8IVI9 506 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 GLYCTKQ8IVS8 523 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 GPR65Q8IYL9 337 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 FBXO18Q8NFZ0 1043 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 DEPTORQ8TB45 409 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 RIN2Q8WYP3 895 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 BSNDQ8WZ55 320 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 ATOH1Q92858 354 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 ZSCAN31Q96LW9 406 aaPredicted RBP12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 PAAF1Q9BRP4 392 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 RHOBTB2Q9BYZ6 727 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 PLEKHA4Q9H4M7 779 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 PDZD7Q9H5P4 517 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 KCNK12Q9HB15 430 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 WDR6Q9NNW5 1121 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 FAM86C1Q9NVL1 165 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 FNIP2Q9P278 1114 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 CACNG4Q9UBN1 327 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 NOL7Q9UMY1 257 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 DOCK8Q8NF50 2099 aa12.23□□□□□ -0.45
CCDC88C-213ENST00000557455 CLUHO75153 1309 aa12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 SF3B1O75533 1304 aaKnown RBP eCLIP12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 VWA8A3KMH1 1905 aa12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 CASTOR2A6NHX0 329 aa12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 TTLL13PA6NNM8 815 aa12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 H0Y858 1186 aa12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 ACKR2O00590 384 aa12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 GALR2O43603 387 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 THP07101 528 aa12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 RPL17P18621 184 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 CCT6AP40227 531 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 TRAPPC10P48553 1259 aa12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 ASTLQ6HA08 431 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 TMEM105Q8N8V8 129 aa12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 FLCNQ8NFG4 579 aa12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 SMG7Q92540 1137 aaKnown RBP12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 IFT74Q96LB3 600 aa12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 CCDC113Q9H0I3 377 aa12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 NT5C3AQ9H0P0 336 aa12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 BHMT2Q9H2M3 363 aa12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 PIDD1Q9HB75 910 aa12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 SH2B1Q9NRF2 756 aaPredicted RBP12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 IGSF9Q9P2J2 1179 aa12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 LRWD1Q9UFC0 647 aa12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 DUSP12Q9UNI6 340 aa12.22□□□□□ -0.45
CCDC88C-213ENST00000557455 PTGESO14684 152 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 N4BP1O75113 896 aaKnown RBP12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 RECQL4O94761 1208 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 EDN1P05305 212 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 FXR2P51116 673 aaKnown RBP eCLIP12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 CLCN5P51795 746 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 EFNA5P52803 228 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 PDIA5Q14554 519 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 ECM1Q16610 540 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 DCAF4L1Q3SXM0 396 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 RTP2Q5QGT7 225 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 LILRA6Q6PI73 481 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 PRSS55Q6UWB4 352 aaPredicted RBP12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 CEP57Q86XR8 500 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 HASPINQ8TF76 798 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 KIFAP3Q92845 792 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 ZNF707Q96C28 371 aaPredicted RBP12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 TTPALQ9BTX7 342 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 RAB34Q9BZG1 259 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 PRKD2Q9BZL6 878 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 POLD4Q9HCU8 107 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 ZDHHC7Q9NXF8 308 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 DAXXQ9UER7 740 aaPredicted RBP12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 FBXL21Q9UKT6 434 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 KIAA1024Q9UPX6 916 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 USP20Q9Y2K6 914 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 GDAQ9Y2T3 454 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 STK24Q9Y6E0 443 aa12.21□□□□□ -0.45
CCDC88C-213ENST00000557455 DOCK6Q96HP0 2047 aa12.21□□□□□ -0.46
CCDC88C-213ENST00000557455 MYH11P35749 1972 aa12.21□□□□□ -0.46
CCDC88C-213ENST00000557455 KIF4AO95239 1232 aa12.2□□□□□ -0.46
CCDC88C-213ENST00000557455 PAPLNO95428 1278 aa12.2□□□□□ -0.46
CCDC88C-213ENST00000557455 ELAVL2Q12926 359 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-213ENST00000557455 NBR1Q14596 966 aa12.2□□□□□ -0.46
CCDC88C-213ENST00000557455 ATF7IP2Q5U623 682 aa12.2□□□□□ -0.46
CCDC88C-213ENST00000557455 FAM171A1Q5VUB5 890 aa12.2□□□□□ -0.46
CCDC88C-213ENST00000557455 C4orf32Q8N8J7 132 aa12.2□□□□□ -0.46
CCDC88C-213ENST00000557455 SNX29Q8TEQ0 813 aa12.2□□□□□ -0.46
CCDC88C-213ENST00000557455 MYADMQ96S97 322 aa12.2□□□□□ -0.46
CCDC88C-213ENST00000557455 KIFC3Q9BVG8 833 aa12.2□□□□□ -0.46
CCDC88C-213ENST00000557455 CXCL16Q9H2A7 254 aa12.2□□□□□ -0.46
CCDC88C-213ENST00000557455 DDX19AQ9NUU7 478 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-213ENST00000557455 EPS15L1Q9UBC2 864 aa12.2□□□□□ -0.46
CCDC88C-213ENST00000557455 CACNA1HO95180 2353 aa12.2□□□□□ -0.46
CCDC88C-213ENST00000557455 CITO14578 2027 aa12.2□□□□□ -0.46
CCDC88C-213ENST00000557455 K7ERI5 159 aa12.19□□□□□ -0.46
CCDC88C-213ENST00000557455 NARSO43776 548 aaKnown RBP12.19□□□□□ -0.46
CCDC88C-213ENST00000557455 ZMYND10O75800 440 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms