RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 ACCSQ96QU6 501 aa14.87□□□□□ -0.03
SHMT2-228ENST00000557302 RPS6KC1Q96S38 1066 aa14.87□□□□□ -0.03
SHMT2-228ENST00000557302 STRA6Q9BX79 667 aa14.87□□□□□ -0.03
SHMT2-228ENST00000557302 GBP3Q9H0R5 595 aa14.87□□□□□ -0.03
SHMT2-228ENST00000557302 KLK14Q9P0G3 267 aa14.87□□□□□ -0.03
SHMT2-228ENST00000557302 EXOC7Q9UPT5 735 aa14.87□□□□□ -0.03
SHMT2-228ENST00000557302 PPM1AP35813 382 aa14.86□□□□□ -0.03
SHMT2-228ENST00000557302 ALDH7A1P49419 539 aaKnown RBP14.86□□□□□ -0.03
SHMT2-228ENST00000557302 CASP5P51878 434 aa14.86□□□□□ -0.03
SHMT2-228ENST00000557302 YARSP54577 528 aaKnown RBP14.86□□□□□ -0.03
SHMT2-228ENST00000557302 OSTNP61366 133 aa14.86□□□□□ -0.03
SHMT2-228ENST00000557302 FAM160A1Q05DH4 1040 aa14.86□□□□□ -0.03
SHMT2-228ENST00000557302 PTPROQ16827 1216 aa14.86□□□□□ -0.03
SHMT2-228ENST00000557302 KANK3Q6NY19 840 aa14.86□□□□□ -0.03
SHMT2-228ENST00000557302 CEP120Q8N960 986 aa14.86□□□□□ -0.03
SHMT2-228ENST00000557302 TMEM87AQ8NBN3 555 aa14.86□□□□□ -0.03
SHMT2-228ENST00000557302 HPS3Q969F9 1004 aa14.86□□□□□ -0.03
SHMT2-228ENST00000557302 FGFBP2Q9BYJ0 223 aa14.86□□□□□ -0.03
SHMT2-228ENST00000557302 NRDE2Q9H7Z3 1164 aa14.86□□□□□ -0.03
SHMT2-228ENST00000557302 TOPORSQ9NS56 1045 aaPredicted RBP14.86□□□□□ -0.03
SHMT2-228ENST00000557302 LMCD1Q9NZU5 365 aa14.86□□□□□ -0.03
SHMT2-228ENST00000557302 VCANP13611 3396 aa14.86□□□□□ -0.03
SHMT2-228ENST00000557302 RALGAPA2Q2PPJ7 1873 aa14.86□□□□□ -0.03
SHMT2-228ENST00000557302 NLRC5Q86WI3 1866 aa14.85□□□□□ -0.03
SHMT2-228ENST00000557302 FGF18O76093 207 aa14.85□□□□□ -0.03
SHMT2-228ENST00000557302 PRPF6O94906 941 aaKnown RBP14.85□□□□□ -0.03
SHMT2-228ENST00000557302 ITGB1P05556 798 aa14.85□□□□□ -0.03
SHMT2-228ENST00000557302 POU3F3P20264 500 aaPredicted RBP14.85□□□□□ -0.03
SHMT2-228ENST00000557302 PBX3P40426 434 aa14.85□□□□□ -0.03
SHMT2-228ENST00000557302 BCAR1P56945 870 aa14.85□□□□□ -0.03
SHMT2-228ENST00000557302 KCNA1Q09470 495 aa14.85□□□□□ -0.03
SHMT2-228ENST00000557302 GRIK3Q13003 919 aa14.85□□□□□ -0.03
SHMT2-228ENST00000557302 SLFN12LQ6IEE8 588 aa14.85□□□□□ -0.03
SHMT2-228ENST00000557302 ZNF280BQ86YH2 543 aa14.85□□□□□ -0.03
SHMT2-228ENST00000557302 SYCP3Q8IZU3 236 aa14.85□□□□□ -0.03
SHMT2-228ENST00000557302 FMR1NBQ8N0W7 255 aaPredicted RBP14.85□□□□□ -0.03
SHMT2-228ENST00000557302 GSTCDQ8NEC7 633 aa14.85□□□□□ -0.03
SHMT2-228ENST00000557302 MRPL38Q96DV4 380 aaKnown RBP14.85□□□□□ -0.03
SHMT2-228ENST00000557302 ACAP3Q96P50 834 aa14.85□□□□□ -0.03
SHMT2-228ENST00000557302 TMEM175Q9BSA9 504 aa14.85□□□□□ -0.03
SHMT2-228ENST00000557302 MSTO1Q9BUK6 570 aa14.85□□□□□ -0.03
SHMT2-228ENST00000557302 LMAN2LQ9H0V9 348 aa14.85□□□□□ -0.03
SHMT2-228ENST00000557302 TMEM206Q9H813 350 aa14.85□□□□□ -0.03
SHMT2-228ENST00000557302 ALG13Q9NP73 1137 aaKnown RBP14.85□□□□□ -0.03
SHMT2-228ENST00000557302 EXOC1Q9NV70 894 aa14.85□□□□□ -0.03
SHMT2-228ENST00000557302 MIOSQ9NXC5 875 aa14.85□□□□□ -0.03
SHMT2-228ENST00000557302 SPG21Q9NZD8 308 aa14.85□□□□□ -0.03
SHMT2-228ENST00000557302 PLAGL2Q9UPG8 496 aa14.85□□□□□ -0.03
SHMT2-228ENST00000557302 MTCH2Q9Y6C9 303 aa14.85□□□□□ -0.03
SHMT2-228ENST00000557302 ANKRD63C9JTQ0 380 aa14.84□□□□□ -0.03
SHMT2-228ENST00000557302 GRM6O15303 877 aa14.84□□□□□ -0.03
SHMT2-228ENST00000557302 EIF3DO15371 548 aaKnown RBP eCLIP14.84□□□□□ -0.03
SHMT2-228ENST00000557302 KLRC4O43908 158 aa14.84□□□□□ -0.03
SHMT2-228ENST00000557302 B4GALT3O60512 393 aa14.84□□□□□ -0.03
SHMT2-228ENST00000557302 DDHD2O94830 711 aa14.84□□□□□ -0.03
SHMT2-228ENST00000557302 GALTP07902 379 aa14.84□□□□□ -0.03
SHMT2-228ENST00000557302 EHHADHQ08426 723 aa14.84□□□□□ -0.03
SHMT2-228ENST00000557302 SNW1Q13573 536 aaKnown RBP14.84□□□□□ -0.03
SHMT2-228ENST00000557302 KYAT1Q16773 422 aa14.84□□□□□ -0.03
SHMT2-228ENST00000557302 SLC39A4Q6P5W5 647 aa14.84□□□□□ -0.03
SHMT2-228ENST00000557302 SLC39A11Q8N1S5 342 aa14.84□□□□□ -0.03
SHMT2-228ENST00000557302 MICALL1Q8N3F8 863 aa14.84□□□□□ -0.03
SHMT2-228ENST00000557302 GLIS3Q8NEA6 775 aa14.84□□□□□ -0.03
SHMT2-228ENST00000557302 ENGASEQ8NFI3 743 aa14.84□□□□□ -0.03
SHMT2-228ENST00000557302 SPPL3Q8TCT6 385 aa14.84□□□□□ -0.03
SHMT2-228ENST00000557302 CCDC47Q96A33 483 aaKnown RBP14.84□□□□□ -0.03
SHMT2-228ENST00000557302 HAPLN2Q9GZV7 340 aa14.84□□□□□ -0.03
SHMT2-228ENST00000557302 DNAJB4Q9UDY4 337 aa14.84□□□□□ -0.03
SHMT2-228ENST00000557302 COL4A4P53420 1690 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-228ENST00000557302 KIAA1671Q9BY89 1806 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 A0A0B4J269 797 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 TISP43B9A030 160 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 NT5C1B-RDH14C9J2C7 533 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 PTGESO14684 152 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 OGTO15294 1046 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 GADD45BO75293 160 aaPredicted RBP14.83□□□□□ -0.04
SHMT2-228ENST00000557302 NR1I2O75469 434 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 RPN1P04843 607 aaKnown RBP14.83□□□□□ -0.04
SHMT2-228ENST00000557302 ALDH2P05091 517 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 THP07101 528 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 CLTAP09496 248 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 PRR29P0C7W0 189 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 SLC11A1P49279 550 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 PLCB3Q01970 1234 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 KRT17Q04695 432 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 UBE3AQ05086 875 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 DSC1Q08554 894 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 DPYDQ12882 1025 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 POSTNQ15063 836 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 KMT5BQ4FZB7 885 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 SEZ6Q53EL9 994 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 EPM2AIP1Q7L775 607 aaPredicted RBP14.83□□□□□ -0.04
SHMT2-228ENST00000557302 COLGALT2Q8IYK4 626 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 MAFAQ8NHW3 353 aaPredicted RBP14.83□□□□□ -0.04
SHMT2-228ENST00000557302 TMEM169Q96HH4 297 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 SNX27Q96L92 541 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 TIGD1Q96MW7 591 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 IKZF4Q9H2S9 585 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 SLC39A2Q9NP94 309 aa14.83□□□□□ -0.04
SHMT2-228ENST00000557302 PUF60Q9UHX1 559 aaKnown RBP14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms