RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 PPP4R4Q6NUP7 873 aa5.59□□□□□ -1.51
PRPF39-210ENST00000556718 OLFML1Q6UWY5 402 aa5.59□□□□□ -1.51
PRPF39-210ENST00000556718 FRMD7Q6ZUT3 714 aa5.59□□□□□ -1.51
PRPF39-210ENST00000556718 CMTM4Q8IZR5 234 aa5.59□□□□□ -1.51
PRPF39-210ENST00000556718 CBARPQ8N350 705 aaPredicted RBP5.59□□□□□ -1.51
PRPF39-210ENST00000556718 MAGEB6Q8N7X4 407 aa5.59□□□□□ -1.51
PRPF39-210ENST00000556718 C1orf162Q8NEQ5 155 aaPredicted RBP5.59□□□□□ -1.51
PRPF39-210ENST00000556718 TTC8Q8TAM2 541 aa5.59□□□□□ -1.51
PRPF39-210ENST00000556718 ELF4Q99607 663 aaPredicted RBP5.59□□□□□ -1.51
PRPF39-210ENST00000556718 RTFDC1Q9BY42 306 aaPredicted RBP5.59□□□□□ -1.51
PRPF39-210ENST00000556718 HAPLN2Q9GZV7 340 aa5.59□□□□□ -1.51
PRPF39-210ENST00000556718 MYH16Q9H6N6 1097 aa5.59□□□□□ -1.51
PRPF39-210ENST00000556718 VTA1Q9NP79 307 aa5.59□□□□□ -1.51
PRPF39-210ENST00000556718 PNMA8BQ9ULN7 279 aaPredicted RBP5.59□□□□□ -1.51
PRPF39-210ENST00000556718 ZAR1LA6NP61 321 aa5.58□□□□□ -1.52
PRPF39-210ENST00000556718 TPD52L2O43399 206 aaKnown RBP5.58□□□□□ -1.52
PRPF39-210ENST00000556718 RBP3P10745 1247 aa5.58□□□□□ -1.52
PRPF39-210ENST00000556718 OS9Q13438 667 aaPredicted RBP5.58□□□□□ -1.52
PRPF39-210ENST00000556718 LRRC32Q14392 662 aa5.58□□□□□ -1.52
PRPF39-210ENST00000556718 CLUL1Q15846 466 aa5.58□□□□□ -1.52
PRPF39-210ENST00000556718 INAVAQ3KP66 663 aa5.58□□□□□ -1.52
PRPF39-210ENST00000556718 TMEM240Q5SV17 173 aa5.58□□□□□ -1.52
PRPF39-210ENST00000556718 GORABQ5T7V8 394 aa5.58□□□□□ -1.52
PRPF39-210ENST00000556718 PRAMEF9Q5VWM5 478 aa5.58□□□□□ -1.52
PRPF39-210ENST00000556718 SLC4A10Q6U841 1118 aa5.58□□□□□ -1.52
PRPF39-210ENST00000556718 NME9Q86XW9 330 aa5.58□□□□□ -1.52
PRPF39-210ENST00000556718 E2F7Q96AV8 911 aa5.58□□□□□ -1.52
PRPF39-210ENST00000556718 ACAP3Q96P50 834 aa5.58□□□□□ -1.52
PRPF39-210ENST00000556718 RHOBTB2Q9BYZ6 727 aa5.58□□□□□ -1.52
PRPF39-210ENST00000556718 TCF7L1Q9HCS4 588 aa5.58□□□□□ -1.52
PRPF39-210ENST00000556718 CENPVL1A0A0U1RR11 272 aa5.57□□□□□ -1.52
PRPF39-210ENST00000556718 KLHL33A6NCF5 533 aa5.57□□□□□ -1.52
PRPF39-210ENST00000556718 XPOTO43592 962 aaKnown RBP5.57□□□□□ -1.52
PRPF39-210ENST00000556718 KDM1AO60341 852 aa5.57□□□□□ -1.52
PRPF39-210ENST00000556718 LPXNO60711 386 aa5.57□□□□□ -1.52
PRPF39-210ENST00000556718 SCAF4O95104 1147 aaKnown RBP5.57□□□□□ -1.52
PRPF39-210ENST00000556718 PF4V1P10720 104 aa5.57□□□□□ -1.52
PRPF39-210ENST00000556718 ZNF37AP17032 561 aaPredicted RBP5.57□□□□□ -1.52
PRPF39-210ENST00000556718 GNAT2P19087 354 aa5.57□□□□□ -1.52
PRPF39-210ENST00000556718 CYP2C19P33261 490 aa5.57□□□□□ -1.52
PRPF39-210ENST00000556718 KIR2DL3P43628 341 aa5.57□□□□□ -1.52
PRPF39-210ENST00000556718 CLK3P49761 638 aaKnown RBP5.57□□□□□ -1.52
PRPF39-210ENST00000556718 NPEPPSP55786 919 aa5.57□□□□□ -1.52
PRPF39-210ENST00000556718 ADCY1Q08828 1119 aa5.57□□□□□ -1.52
PRPF39-210ENST00000556718 MYBPC3Q14896 1274 aa5.57□□□□□ -1.52
PRPF39-210ENST00000556718 ACAP2Q15057 778 aa5.57□□□□□ -1.52
PRPF39-210ENST00000556718 MINDY4Q4G0A6 757 aa5.57□□□□□ -1.52
PRPF39-210ENST00000556718 COLEC12Q5KU26 742 aa5.57□□□□□ -1.52
PRPF39-210ENST00000556718 TTC38Q5R3I4 469 aa5.57□□□□□ -1.52
PRPF39-210ENST00000556718 EFCAB2Q5VUJ9 269 aa5.57□□□□□ -1.52
PRPF39-210ENST00000556718 ADGRG3Q86Y34 549 aa5.57□□□□□ -1.52
PRPF39-210ENST00000556718 CPA6Q8N4T0 437 aa5.57□□□□□ -1.52
PRPF39-210ENST00000556718 MORC4Q8TE76 937 aa5.57□□□□□ -1.52
PRPF39-210ENST00000556718 TUBGCP5Q96RT8 1024 aa5.57□□□□□ -1.52
PRPF39-210ENST00000556718 PRDM13Q9H4Q3 707 aa5.57□□□□□ -1.52
PRPF39-210ENST00000556718 TRIM75PA6NK02 468 aa5.56□□□□□ -1.52
PRPF39-210ENST00000556718 KIAA0355O15063 1070 aa5.56□□□□□ -1.52
PRPF39-210ENST00000556718 B3GALT2O43825 422 aa5.56□□□□□ -1.52
PRPF39-210ENST00000556718 IL33O95760 270 aa5.56□□□□□ -1.52
PRPF39-210ENST00000556718 ATXN1P54253 815 aaKnown RBP5.56□□□□□ -1.52
PRPF39-210ENST00000556718 FAM189BP81408 668 aa5.56□□□□□ -1.52
PRPF39-210ENST00000556718 BIRC2Q13490 618 aa5.56□□□□□ -1.52
PRPF39-210ENST00000556718 GTF2H3Q13889 308 aa5.56□□□□□ -1.52
PRPF39-210ENST00000556718 PCBP2Q15366 365 aaKnown RBP eCLIP5.56□□□□□ -1.52
PRPF39-210ENST00000556718 TIGD2Q4W5G0 525 aa5.56□□□□□ -1.52
PRPF39-210ENST00000556718 DCAF17Q5H9S7 520 aaPredicted RBP5.56□□□□□ -1.52
PRPF39-210ENST00000556718 ZKSCAN2Q63HK3 967 aa5.56□□□□□ -1.52
PRPF39-210ENST00000556718 BMP8AQ7Z5Y6 402 aa5.56□□□□□ -1.52
PRPF39-210ENST00000556718 HSPBAP1Q96EW2 488 aa5.56□□□□□ -1.52
PRPF39-210ENST00000556718 C16orf92Q96LL3 132 aa5.56□□□□□ -1.52
PRPF39-210ENST00000556718 NUP88Q99567 741 aaPredicted RBP5.56□□□□□ -1.52
PRPF39-210ENST00000556718 TOR3AQ9H497 397 aa5.56□□□□□ -1.52
PRPF39-210ENST00000556718 C14orf93Q9H972 538 aaKnown RBP5.56□□□□□ -1.52
PRPF39-210ENST00000556718 PRDM11Q9NQV5 511 aa5.56□□□□□ -1.52
PRPF39-210ENST00000556718 TOPORSQ9NS56 1045 aaPredicted RBP5.56□□□□□ -1.52
PRPF39-210ENST00000556718 USP36Q9P275 1121 aaKnown RBP5.56□□□□□ -1.52
PRPF39-210ENST00000556718 RIPOR2Q9Y4F9 1068 aa5.56□□□□□ -1.52
PRPF39-210ENST00000556718 A0A0A6YYK5 440 aaPredicted RBP5.55□□□□□ -1.52
PRPF39-210ENST00000556718 AHRRA9YTQ3 701 aa5.55□□□□□ -1.52
PRPF39-210ENST00000556718 DAPK3O43293 454 aa5.55□□□□□ -1.52
PRPF39-210ENST00000556718 PTX3P26022 381 aaPredicted RBP5.55□□□□□ -1.52
PRPF39-210ENST00000556718 UBE4AQ14139 1066 aa5.55□□□□□ -1.52
PRPF39-210ENST00000556718 BRD3Q15059 726 aa5.55□□□□□ -1.52
PRPF39-210ENST00000556718 EPHA7Q15375 998 aa5.55□□□□□ -1.52
PRPF39-210ENST00000556718 MAP9Q49MG5 647 aa5.55□□□□□ -1.52
PRPF39-210ENST00000556718 KSR2Q6VAB6 950 aa5.55□□□□□ -1.52
PRPF39-210ENST00000556718 Q6YL49 198 aa5.55□□□□□ -1.52
PRPF39-210ENST00000556718 APBB1IPQ7Z5R6 666 aaPredicted RBP5.55□□□□□ -1.52
PRPF39-210ENST00000556718 DGKHQ86XP1 1220 aa5.55□□□□□ -1.52
PRPF39-210ENST00000556718 TPH2Q8IWU9 490 aa5.55□□□□□ -1.52
PRPF39-210ENST00000556718 LMBR1Q8WVP7 490 aa5.55□□□□□ -1.52
PRPF39-210ENST00000556718 SSH1Q8WYL5 1049 aa5.55□□□□□ -1.52
PRPF39-210ENST00000556718 SOX7Q9BT81 388 aa5.55□□□□□ -1.52
PRPF39-210ENST00000556718 CPEB1Q9BZB8 566 aaKnown RBP5.55□□□□□ -1.52
PRPF39-210ENST00000556718 ARNT2Q9HBZ2 717 aa5.55□□□□□ -1.52
PRPF39-210ENST00000556718 ADARB2Q9NS39 739 aaKnown RBP5.55□□□□□ -1.52
PRPF39-210ENST00000556718 ING3Q9NXR8 418 aa5.55□□□□□ -1.52
PRPF39-210ENST00000556718 ERC2O15083 957 aa5.54□□□□□ -1.52
PRPF39-210ENST00000556718 ZEB1P37275 1124 aaPredicted RBP5.54□□□□□ -1.52
PRPF39-210ENST00000556718 RHBDL3P58872 404 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms