RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 NDRG2Q9UN36 371 aaKnown RBP10.78□□□□□ -0.68
SCFD1-215ENST00000555259 DDX11L8A8MPP1 907 aa10.77□□□□□ -0.68
SCFD1-215ENST00000555259 SLC27A2O14975 620 aa10.77□□□□□ -0.68
SCFD1-215ENST00000555259 PSMD10O75832 226 aa10.77□□□□□ -0.68
SCFD1-215ENST00000555259 POU2F2P09086 479 aa10.77□□□□□ -0.68
SCFD1-215ENST00000555259 AAMPQ13685 434 aa10.77□□□□□ -0.68
SCFD1-215ENST00000555259 PABPC1LQ4VXU2 614 aaKnown RBP10.77□□□□□ -0.68
SCFD1-215ENST00000555259 DIEXFQ68CQ4 756 aaKnown RBP10.77□□□□□ -0.68
SCFD1-215ENST00000555259 PLA2G4FQ68DD2 849 aa10.77□□□□□ -0.68
SCFD1-215ENST00000555259 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.77□□□□□ -0.68
SCFD1-215ENST00000555259 GSTCDQ8NEC7 633 aa10.77□□□□□ -0.68
SCFD1-215ENST00000555259 PRPF31Q8WWY3 499 aaKnown RBP10.77□□□□□ -0.68
SCFD1-215ENST00000555259 ING5Q8WYH8 240 aa10.77□□□□□ -0.68
SCFD1-215ENST00000555259 RABGGTAQ92696 567 aa10.77□□□□□ -0.68
SCFD1-215ENST00000555259 DNASE1L2Q92874 299 aa10.77□□□□□ -0.68
SCFD1-215ENST00000555259 CCDC136Q96JN2 1154 aa10.77□□□□□ -0.68
SCFD1-215ENST00000555259 BRPF3Q9ULD4 1205 aa10.77□□□□□ -0.68
SCFD1-215ENST00000555259 TDRD15B5MCY1 1934 aaKnown RBP10.77□□□□□ -0.69
SCFD1-215ENST00000555259 RALGAPA1Q6GYQ0 2036 aa10.77□□□□□ -0.69
SCFD1-215ENST00000555259 NOTCH4Q99466 2003 aa10.77□□□□□ -0.69
SCFD1-215ENST00000555259 IGF2RP11717 2491 aa10.77□□□□□ -0.69
SCFD1-215ENST00000555259 MAN2B1O00754 1011 aa10.77□□□□□ -0.69
SCFD1-215ENST00000555259 TM4SF5O14894 197 aa10.77□□□□□ -0.69
SCFD1-215ENST00000555259 HRO43593 1189 aa10.77□□□□□ -0.69
SCFD1-215ENST00000555259 TADA2AO75478 443 aa10.77□□□□□ -0.69
SCFD1-215ENST00000555259 ERLIN2O94905 339 aa10.77□□□□□ -0.69
SCFD1-215ENST00000555259 CDC27P30260 824 aa10.77□□□□□ -0.69
SCFD1-215ENST00000555259 LIMK1P53667 647 aa10.77□□□□□ -0.69
SCFD1-215ENST00000555259 SRSF5Q13243 272 aaKnown RBP10.77□□□□□ -0.69
SCFD1-215ENST00000555259 B3GNT9Q6UX72 402 aa10.77□□□□□ -0.69
SCFD1-215ENST00000555259 SLC7A14Q8TBB6 771 aa10.77□□□□□ -0.69
SCFD1-215ENST00000555259 CCDC12Q8WUD4 166 aaPredicted RBP10.77□□□□□ -0.69
SCFD1-215ENST00000555259 PSPC1Q8WXF1 523 aaKnown RBP10.77□□□□□ -0.69
SCFD1-215ENST00000555259 SLC7A3Q8WY07 619 aa10.77□□□□□ -0.69
SCFD1-215ENST00000555259 PIK3R5Q8WYR1 880 aa10.77□□□□□ -0.69
SCFD1-215ENST00000555259 TTPALQ9BTX7 342 aa10.77□□□□□ -0.69
SCFD1-215ENST00000555259 APOL6Q9BWW8 343 aa10.77□□□□□ -0.69
SCFD1-215ENST00000555259 DNMT3BQ9UBC3 853 aaKnown RBP10.77□□□□□ -0.69
SCFD1-215ENST00000555259 GIT1Q9Y2X7 761 aa10.77□□□□□ -0.69
SCFD1-215ENST00000555259 SF3B1O75533 1304 aaKnown RBP eCLIP10.77□□□□□ -0.693e-6■■■■■ 57.3
SCFD1-215ENST00000555259 GOLGA8AA7E2F4 631 aa10.76□□□□□ -0.69
SCFD1-215ENST00000555259 GOLGA8BA8MQT2 603 aa10.76□□□□□ -0.69
SCFD1-215ENST00000555259 ADAM12O43184 909 aa10.76□□□□□ -0.69
SCFD1-215ENST00000555259 TSPAN1O60635 241 aa10.76□□□□□ -0.69
SCFD1-215ENST00000555259 GNA11P29992 359 aa10.76□□□□□ -0.69
SCFD1-215ENST00000555259 CXCL12P48061 93 aa10.76□□□□□ -0.69
SCFD1-215ENST00000555259 NPEPPSP55786 919 aa10.76□□□□□ -0.69
SCFD1-215ENST00000555259 SATB1Q01826 763 aa10.76□□□□□ -0.69
SCFD1-215ENST00000555259 LAMTOR4Q0VGL1 99 aa10.76□□□□□ -0.69
SCFD1-215ENST00000555259 PSMD5Q16401 504 aa10.76□□□□□ -0.69
SCFD1-215ENST00000555259 AXDND1Q5T1B0 1012 aaPredicted RBP10.76□□□□□ -0.69
SCFD1-215ENST00000555259 CREB3L3Q68CJ9 461 aa10.76□□□□□ -0.69
SCFD1-215ENST00000555259 TANGO2Q6ICL3 276 aa10.76□□□□□ -0.69
SCFD1-215ENST00000555259 NOTUMQ6P988 496 aa10.76□□□□□ -0.69
SCFD1-215ENST00000555259 RNF149Q8NC42 400 aa10.76□□□□□ -0.69
SCFD1-215ENST00000555259 LNX1Q8TBB1 728 aaPredicted RBP10.76□□□□□ -0.69
SCFD1-215ENST00000555259 TMEM143Q96AN5 459 aa10.76□□□□□ -0.69
SCFD1-215ENST00000555259 ELSPBP1Q96BH3 223 aa10.76□□□□□ -0.69
SCFD1-215ENST00000555259 CCDC51Q96ER9 411 aa10.76□□□□□ -0.69
SCFD1-215ENST00000555259 MCRS1Q96EZ8 462 aa10.76□□□□□ -0.69
SCFD1-215ENST00000555259 PAAF1Q9BRP4 392 aa10.76□□□□□ -0.69
SCFD1-215ENST00000555259 NXF3Q9H4D5 531 aaKnown RBP10.76□□□□□ -0.69
SCFD1-215ENST00000555259 LMAN1LQ9HAT1 526 aa10.76□□□□□ -0.69
SCFD1-215ENST00000555259 GDE1Q9NZC3 331 aa10.76□□□□□ -0.69
SCFD1-215ENST00000555259 CACNG4Q9UBN1 327 aa10.76□□□□□ -0.69
SCFD1-215ENST00000555259 MRPS23Q9Y3D9 190 aaKnown RBP10.76□□□□□ -0.69
SCFD1-215ENST00000555259 CHURC1-FNTBB4DL54 471 aa10.75□□□□□ -0.69
SCFD1-215ENST00000555259 AXLP30530 894 aa10.75□□□□□ -0.69
SCFD1-215ENST00000555259 CNR2P34972 360 aa10.75□□□□□ -0.69
SCFD1-215ENST00000555259 FNTBP49356 437 aa10.75□□□□□ -0.69
SCFD1-215ENST00000555259 USP11P51784 963 aa10.75□□□□□ -0.69
SCFD1-215ENST00000555259 PSMC5P62195 406 aa10.75□□□□□ -0.69
SCFD1-215ENST00000555259 GRIK3Q13003 919 aa10.75□□□□□ -0.69
SCFD1-215ENST00000555259 GAS6Q14393 721 aa10.75□□□□□ -0.69
SCFD1-215ENST00000555259 HSP90AA2PQ14568 343 aaPredicted RBP10.75□□□□□ -0.69
SCFD1-215ENST00000555259 SLC5A9Q2M3M2 681 aa10.75□□□□□ -0.69
SCFD1-215ENST00000555259 UVSSAQ2YD98 709 aa10.75□□□□□ -0.69
SCFD1-215ENST00000555259 AASDHQ4L235 1098 aaPredicted RBP10.75□□□□□ -0.69
SCFD1-215ENST00000555259 FAM171A1Q5VUB5 890 aa10.75□□□□□ -0.69
SCFD1-215ENST00000555259 CEP57Q86XR8 500 aa10.75□□□□□ -0.69
SCFD1-215ENST00000555259 FAM160A2Q8N612 972 aaPredicted RBP10.75□□□□□ -0.69
SCFD1-215ENST00000555259 ZNF579Q8NAF0 562 aaKnown RBP10.75□□□□□ -0.69
SCFD1-215ENST00000555259 HASPINQ8TF76 798 aa10.75□□□□□ -0.69
SCFD1-215ENST00000555259 FAM3CQ92520 227 aa10.75□□□□□ -0.69
SCFD1-215ENST00000555259 CPB2Q96IY4 423 aa10.75□□□□□ -0.69
SCFD1-215ENST00000555259 TCEANC2Q96MN5 208 aa10.75□□□□□ -0.69
SCFD1-215ENST00000555259 LSG1Q9H089 658 aaKnown RBP10.75□□□□□ -0.69
SCFD1-215ENST00000555259 CSRNP2Q9H175 543 aa10.75□□□□□ -0.69
SCFD1-215ENST00000555259 DHX33Q9H6R0 707 aaKnown RBP10.75□□□□□ -0.69
SCFD1-215ENST00000555259 BRD9Q9H8M2 597 aa10.75□□□□□ -0.69
SCFD1-215ENST00000555259 ZMIZ1Q9ULJ6 1067 aa10.75□□□□□ -0.69
SCFD1-215ENST00000555259 SMG1Q96Q15 3661 aaKnown RBP10.75□□□□□ -0.69
SCFD1-215ENST00000555259 SDK1Q7Z5N4 2213 aa10.74□□□□□ -0.69
SCFD1-215ENST00000555259 C1QTNF9BB2RNN3 333 aa10.74□□□□□ -0.69
SCFD1-215ENST00000555259 RHOP08100 348 aa10.74□□□□□ -0.69
SCFD1-215ENST00000555259 C1QTNF9P0C862 333 aa10.74□□□□□ -0.69
SCFD1-215ENST00000555259 FCARP24071 287 aa10.74□□□□□ -0.69
SCFD1-215ENST00000555259 AKAP5P24588 427 aa10.74□□□□□ -0.69
SCFD1-215ENST00000555259 ADD1P35611 737 aaKnown RBP10.74□□□□□ -0.69
SCFD1-215ENST00000555259 GRM2Q14416 872 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms