RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 GTPBP6O43824 516 aaPredicted RBP15.45■□□□□ 0.06
PTCH1-226ENST00000553011 KLRC4O43908 158 aa15.45■□□□□ 0.06
PTCH1-226ENST00000553011 ZC3H11AO75152 810 aaKnown RBP eCLIP15.45■□□□□ 0.06
PTCH1-226ENST00000553011 DDHD2O94830 711 aa15.45■□□□□ 0.06
PTCH1-226ENST00000553011 PRPF6O94906 941 aaKnown RBP15.45■□□□□ 0.06
PTCH1-226ENST00000553011 ITGB1P05556 798 aa15.45■□□□□ 0.06
PTCH1-226ENST00000553011 ABCD1P33897 745 aa15.45■□□□□ 0.06
PTCH1-226ENST00000553011 GRM5P41594 1212 aa15.45■□□□□ 0.06
PTCH1-226ENST00000553011 MATR3P43243 847 aaKnown RBP eCLIP15.45■□□□□ 0.06
PTCH1-226ENST00000553011 MCL1Q07820 350 aa15.45■□□□□ 0.06
PTCH1-226ENST00000553011 EHHADHQ08426 723 aa15.45■□□□□ 0.06
PTCH1-226ENST00000553011 CSPP1Q1MSJ5 1256 aa15.45■□□□□ 0.06
PTCH1-226ENST00000553011 SEZ6Q53EL9 994 aa15.45■□□□□ 0.06
PTCH1-226ENST00000553011 FAM26FQ5R3K3 315 aa15.45■□□□□ 0.06
PTCH1-226ENST00000553011 L1TD1Q5T7N2 865 aaKnown RBP15.45■□□□□ 0.06
PTCH1-226ENST00000553011 KCNT2Q6UVM3 1135 aa15.45■□□□□ 0.06
PTCH1-226ENST00000553011 FMR1NBQ8N0W7 255 aaPredicted RBP15.45■□□□□ 0.06
PTCH1-226ENST00000553011 ENGASEQ8NFI3 743 aa15.45■□□□□ 0.06
PTCH1-226ENST00000553011 RSPH1Q8WYR4 309 aa15.45■□□□□ 0.06
PTCH1-226ENST00000553011 HVCN1Q96D96 273 aa15.45■□□□□ 0.06
PTCH1-226ENST00000553011 ZNF558Q96NG5 402 aa15.45■□□□□ 0.06
PTCH1-226ENST00000553011 ALG13Q9NP73 1137 aaKnown RBP15.45■□□□□ 0.06
PTCH1-226ENST00000553011 DNAJB4Q9UDY4 337 aa15.45■□□□□ 0.06
PTCH1-226ENST00000553011 PLAGL2Q9UPG8 496 aa15.45■□□□□ 0.06
PTCH1-226ENST00000553011 STXBP5LQ9Y2K9 1186 aa15.45■□□□□ 0.06
PTCH1-226ENST00000553011 PCDHB12Q9Y5F1 795 aa15.45■□□□□ 0.06
PTCH1-226ENST00000553011 PVALEFA0A1B0GWK0 134 aa15.44■□□□□ 0.06
PTCH1-226ENST00000553011 NT5C1B-RDH14C9J2C7 533 aa15.44■□□□□ 0.06
PTCH1-226ENST00000553011 CLDN3O15551 220 aa15.44■□□□□ 0.06
PTCH1-226ENST00000553011 CSPG5O95196 566 aa15.44■□□□□ 0.06
PTCH1-226ENST00000553011 BCAR1P56945 870 aa15.44■□□□□ 0.06
PTCH1-226ENST00000553011 SNW1Q13573 536 aaKnown RBP15.44■□□□□ 0.06
PTCH1-226ENST00000553011 TMEM87AQ8NBN3 555 aa15.44■□□□□ 0.06
PTCH1-226ENST00000553011 P2RX5Q93086 422 aa15.44■□□□□ 0.06
PTCH1-226ENST00000553011 ACCSQ96QU6 501 aa15.44■□□□□ 0.06
PTCH1-226ENST00000553011 RPS6KC1Q96S38 1066 aa15.44■□□□□ 0.06
PTCH1-226ENST00000553011 CCDC94Q9BW85 323 aaPredicted RBP15.44■□□□□ 0.06
PTCH1-226ENST00000553011 KANSL3Q9P2N6 904 aa15.44■□□□□ 0.06
PTCH1-226ENST00000553011 PCDHB13Q9Y5F0 798 aa15.44■□□□□ 0.06
PTCH1-226ENST00000553011 MTCH2Q9Y6C9 303 aa15.44■□□□□ 0.06
PTCH1-226ENST00000553011 ZMYM2Q9UBW7 1377 aa15.44■□□□□ 0.06
PTCH1-226ENST00000553011 PTGESO14684 152 aa15.43■□□□□ 0.06
PTCH1-226ENST00000553011 FGF18O76093 207 aa15.43■□□□□ 0.06
PTCH1-226ENST00000553011 SLC11A1P49279 550 aa15.43■□□□□ 0.06
PTCH1-226ENST00000553011 FAM160A1Q05DH4 1040 aa15.43■□□□□ 0.06
PTCH1-226ENST00000553011 ALCAMQ13740 583 aa15.43■□□□□ 0.06
PTCH1-226ENST00000553011 ZBTB41Q5SVQ8 909 aa15.43■□□□□ 0.06
PTCH1-226ENST00000553011 TMEM173Q86WV6 379 aaPredicted RBP15.43■□□□□ 0.06
PTCH1-226ENST00000553011 SLC39A11Q8N1S5 342 aa15.43■□□□□ 0.06
PTCH1-226ENST00000553011 MICALL1Q8N3F8 863 aa15.43■□□□□ 0.06
PTCH1-226ENST00000553011 SPPL3Q8TCT6 385 aa15.43■□□□□ 0.06
PTCH1-226ENST00000553011 FAM193BQ96PV7 902 aaPredicted RBP15.43■□□□□ 0.06
PTCH1-226ENST00000553011 SLC39A2Q9NP94 309 aa15.43■□□□□ 0.06
PTCH1-226ENST00000553011 A0A0B4J269 797 aa15.42■□□□□ 0.06
PTCH1-226ENST00000553011 MEFVO15553 781 aaPredicted RBP15.42■□□□□ 0.06
PTCH1-226ENST00000553011 GALTP07902 379 aa15.42■□□□□ 0.06
PTCH1-226ENST00000553011 POU3F3P20264 500 aaPredicted RBP15.42■□□□□ 0.06
PTCH1-226ENST00000553011 DNAJB1P25685 340 aa15.42■□□□□ 0.06
PTCH1-226ENST00000553011 TNFSF9P41273 254 aa15.42■□□□□ 0.06
PTCH1-226ENST00000553011 ALDH7A1P49419 539 aaKnown RBP15.42■□□□□ 0.06
PTCH1-226ENST00000553011 DSC1Q08554 894 aa15.42■□□□□ 0.06
PTCH1-226ENST00000553011 GRIK3Q13003 919 aa15.42■□□□□ 0.06
PTCH1-226ENST00000553011 KMT5BQ4FZB7 885 aa15.42■□□□□ 0.06
PTCH1-226ENST00000553011 GLRA4Q5JXX5 417 aa15.42■□□□□ 0.06
PTCH1-226ENST00000553011 EPM2AIP1Q7L775 607 aaPredicted RBP15.42■□□□□ 0.06
PTCH1-226ENST00000553011 COLGALT2Q8IYK4 626 aa15.42■□□□□ 0.06
PTCH1-226ENST00000553011 SYCP3Q8IZU3 236 aa15.42■□□□□ 0.06
PTCH1-226ENST00000553011 BCL7CQ8WUZ0 217 aaPredicted RBP15.42■□□□□ 0.06
PTCH1-226ENST00000553011 ACAP3Q96P50 834 aa15.42■□□□□ 0.06
PTCH1-226ENST00000553011 MSTO1Q9BUK6 570 aa15.42■□□□□ 0.06
PTCH1-226ENST00000553011 EXOC1Q9NV70 894 aa15.42■□□□□ 0.06
PTCH1-226ENST00000553011 SPG21Q9NZD8 308 aa15.42■□□□□ 0.06
PTCH1-226ENST00000553011 CACNG4Q9UBN1 327 aa15.42■□□□□ 0.06
PTCH1-226ENST00000553011 EXOC7Q9UPT5 735 aa15.42■□□□□ 0.06
PTCH1-226ENST00000553011 STYXL1Q9Y6J8 313 aa15.42■□□□□ 0.06
PTCH1-226ENST00000553011 OGTO15294 1046 aa15.41■□□□□ 0.06
PTCH1-226ENST00000553011 FAM189A1O60320 539 aa15.41■□□□□ 0.06
PTCH1-226ENST00000553011 NR1I2O75469 434 aa15.41■□□□□ 0.06
PTCH1-226ENST00000553011 RPN1P04843 607 aaKnown RBP15.41■□□□□ 0.06
PTCH1-226ENST00000553011 MYL1P05976 194 aa15.41■□□□□ 0.06
PTCH1-226ENST00000553011 CXCL8P10145 99 aa15.41■□□□□ 0.06
PTCH1-226ENST00000553011 ADSSP30520 456 aa15.41■□□□□ 0.06
PTCH1-226ENST00000553011 HOXD13P35453 343 aa15.41■□□□□ 0.06
PTCH1-226ENST00000553011 PPM1AP35813 382 aa15.41■□□□□ 0.06
PTCH1-226ENST00000553011 YARSP54577 528 aaKnown RBP15.41■□□□□ 0.06
PTCH1-226ENST00000553011 DPYDQ12882 1025 aa15.41■□□□□ 0.06
PTCH1-226ENST00000553011 CAMK1Q14012 370 aa15.41■□□□□ 0.06
PTCH1-226ENST00000553011 CCDC85BQ15834 202 aaPredicted RBP15.41■□□□□ 0.06
PTCH1-226ENST00000553011 SLC10A6Q3KNW5 377 aa15.41■□□□□ 0.06
PTCH1-226ENST00000553011 STXBP4Q6ZWJ1 553 aa15.41■□□□□ 0.06
PTCH1-226ENST00000553011 MAFAQ8NHW3 353 aaPredicted RBP15.41■□□□□ 0.06
PTCH1-226ENST00000553011 POF1BQ8WVV4 589 aa15.41■□□□□ 0.06
PTCH1-226ENST00000553011 PPM1EQ8WY54 764 aa15.41■□□□□ 0.06
PTCH1-226ENST00000553011 MRPL38Q96DV4 380 aaKnown RBP15.41■□□□□ 0.06
PTCH1-226ENST00000553011 SNX27Q96L92 541 aa15.41■□□□□ 0.06
PTCH1-226ENST00000553011 TMEM175Q9BSA9 504 aa15.41■□□□□ 0.06
PTCH1-226ENST00000553011 LMAN2LQ9H0V9 348 aa15.41■□□□□ 0.06
PTCH1-226ENST00000553011 TOPORSQ9NS56 1045 aaPredicted RBP15.41■□□□□ 0.06
PTCH1-226ENST00000553011 PRG3Q9Y2Y8 225 aaPredicted RBP15.41■□□□□ 0.06
PTCH1-226ENST00000553011 REV3LO60673 3130 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms