RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 ZNF707Q96C28 371 aaPredicted RBP12.68□□□□□ -0.38
NEK3-204ENST00000552973 POLR3CQ9BUI4 534 aaPredicted RBP12.68□□□□□ -0.38
NEK3-204ENST00000552973 NT5C3AQ9H0P0 336 aa12.68□□□□□ -0.38
NEK3-204ENST00000552973 IRF2BPLQ9H1B7 796 aa12.68□□□□□ -0.38
NEK3-204ENST00000552973 DPP7Q9UHL4 492 aa12.68□□□□□ -0.38
NEK3-204ENST00000552973 LIMCH1Q9UPQ0 1083 aa12.68□□□□□ -0.38
NEK3-204ENST00000552973 CLUHO75153 1309 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 ZNF318Q5VUA4 2279 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 STK25O00506 426 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 PTGESO14684 152 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 N4BP3O15049 544 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 RECQL4O94761 1208 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 KIF4AO95239 1232 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 CFHP08603 1231 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 NPR3P17342 541 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 IGFBP6P24592 240 aaPredicted RBP12.67□□□□□ -0.38
NEK3-204ENST00000552973 RPA1P27694 616 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 CCT6AP40227 531 aaKnown RBP12.67□□□□□ -0.38
NEK3-204ENST00000552973 TUSC3Q13454 348 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 GNL2Q13823 731 aaKnown RBP12.67□□□□□ -0.38
NEK3-204ENST00000552973 MAPK6Q16659 721 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 FAM187BQ17R55 369 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 TTC38Q5R3I4 469 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 FAM171A1Q5VUB5 890 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 CWF19L1Q69YN2 538 aaKnown RBP12.67□□□□□ -0.38
NEK3-204ENST00000552973 LILRA6Q6PI73 481 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 GET4Q7L5D6 327 aaPredicted RBP12.67□□□□□ -0.38
NEK3-204ENST00000552973 SIX5Q8N196 739 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 STAMQ92783 540 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 PRIMPOLQ96LW4 560 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 C2orf40Q9H1Z8 148 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.67□□□□□ -0.38
NEK3-204ENST00000552973 IGSF9Q9P2J2 1179 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 DUSP12Q9UNI6 340 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 GDAQ9Y2T3 454 aa12.67□□□□□ -0.38
NEK3-204ENST00000552973 ACKR2O00590 384 aa12.66□□□□□ -0.38
NEK3-204ENST00000552973 THP07101 528 aa12.66□□□□□ -0.38
NEK3-204ENST00000552973 CLCN5P51795 746 aa12.66□□□□□ -0.38
NEK3-204ENST00000552973 NUBP1P53384 320 aa12.66□□□□□ -0.38
NEK3-204ENST00000552973 GLRA4Q5JXX5 417 aa12.66□□□□□ -0.38
NEK3-204ENST00000552973 SLC44A3Q8N4M1 653 aa12.66□□□□□ -0.38
NEK3-204ENST00000552973 FAM184AQ8NB25 1140 aa12.66□□□□□ -0.38
NEK3-204ENST00000552973 LNX1Q8TBB1 728 aaPredicted RBP12.66□□□□□ -0.38
NEK3-204ENST00000552973 CLSTN3Q9BQT9 956 aa12.66□□□□□ -0.38
NEK3-204ENST00000552973 ADPGKQ9BRR6 497 aa12.66□□□□□ -0.38
NEK3-204ENST00000552973 TTPALQ9BTX7 342 aa12.66□□□□□ -0.38
NEK3-204ENST00000552973 PRKD2Q9BZL6 878 aa12.66□□□□□ -0.38
NEK3-204ENST00000552973 CCDC113Q9H0I3 377 aa12.66□□□□□ -0.38
NEK3-204ENST00000552973 BHMT2Q9H2M3 363 aa12.66□□□□□ -0.38
NEK3-204ENST00000552973 FOXP1Q9H334 677 aaPredicted RBP12.66□□□□□ -0.38
NEK3-204ENST00000552973 PLEKHA4Q9H4M7 779 aa12.66□□□□□ -0.38
NEK3-204ENST00000552973 FNIP2Q9P278 1114 aa12.66□□□□□ -0.38
NEK3-204ENST00000552973 CA14Q9ULX7 337 aa12.66□□□□□ -0.38
NEK3-204ENST00000552973 KIAA1024Q9UPX6 916 aa12.66□□□□□ -0.38
NEK3-204ENST00000552973 SF3B1O75533 1304 aaKnown RBP eCLIP12.65□□□□□ -0.38
NEK3-204ENST00000552973 ADAM12O43184 909 aa12.65□□□□□ -0.38
NEK3-204ENST00000552973 ST18O60284 1047 aa12.65□□□□□ -0.38
NEK3-204ENST00000552973 ZMYND10O75800 440 aa12.65□□□□□ -0.38
NEK3-204ENST00000552973 NAMPTP43490 491 aa12.65□□□□□ -0.38
NEK3-204ENST00000552973 RBM25P49756 843 aaKnown RBP12.65□□□□□ -0.38
NEK3-204ENST00000552973 NTHL1P78549 312 aa12.65□□□□□ -0.38
NEK3-204ENST00000552973 PSMD5Q16401 504 aa12.65□□□□□ -0.38
NEK3-204ENST00000552973 NT5DC1Q5TFE4 455 aa12.65□□□□□ -0.38
NEK3-204ENST00000552973 CYP26C1Q6V0L0 522 aa12.65□□□□□ -0.38
NEK3-204ENST00000552973 GRASPQ7Z6J2 395 aaPredicted RBP12.65□□□□□ -0.38
NEK3-204ENST00000552973 C4orf32Q8N8J7 132 aa12.65□□□□□ -0.38
NEK3-204ENST00000552973 FBXO18Q8NFZ0 1043 aa12.65□□□□□ -0.38
NEK3-204ENST00000552973 HDAC7Q8WUI4 952 aa12.65□□□□□ -0.38
NEK3-204ENST00000552973 LLPHQ9BRT6 129 aaKnown RBP12.65□□□□□ -0.38
NEK3-204ENST00000552973 ZDHHC7Q9NXF8 308 aa12.65□□□□□ -0.38
NEK3-204ENST00000552973 LRWD1Q9UFC0 647 aa12.65□□□□□ -0.38
NEK3-204ENST00000552973 POLIQ9UNA4 740 aa12.65□□□□□ -0.38
NEK3-204ENST00000552973 KRBA1A5PL33 1030 aa12.64□□□□□ -0.39
NEK3-204ENST00000552973 CCDC169A6NNP5 214 aa12.64□□□□□ -0.39
NEK3-204ENST00000552973 PP2D1A8MPX8 630 aa12.64□□□□□ -0.39
NEK3-204ENST00000552973 E9PMD0 336 aa12.64□□□□□ -0.39
NEK3-204ENST00000552973 EIF5BO60841 1220 aaKnown RBP12.64□□□□□ -0.39
NEK3-204ENST00000552973 LAMP2P13473 410 aa12.64□□□□□ -0.39
NEK3-204ENST00000552973 AOC1P19801 751 aa12.64□□□□□ -0.39
NEK3-204ENST00000552973 PPP2R5AQ15172 486 aa12.64□□□□□ -0.39
NEK3-204ENST00000552973 NAB2Q15742 525 aa12.64□□□□□ -0.39
NEK3-204ENST00000552973 ATF7IP2Q5U623 682 aa12.64□□□□□ -0.39
NEK3-204ENST00000552973 HAUS3Q68CZ6 603 aa12.64□□□□□ -0.39
NEK3-204ENST00000552973 ASCL5Q7RTU5 278 aa12.64□□□□□ -0.39
NEK3-204ENST00000552973 GPR65Q8IYL9 337 aa12.64□□□□□ -0.39
NEK3-204ENST00000552973 SNX29Q8TEQ0 813 aa12.64□□□□□ -0.39
NEK3-204ENST00000552973 IFT74Q96LB3 600 aa12.64□□□□□ -0.39
NEK3-204ENST00000552973 RPP25Q9BUL9 199 aaKnown RBP12.64□□□□□ -0.39
NEK3-204ENST00000552973 RHOBTB2Q9BYZ6 727 aa12.64□□□□□ -0.39
NEK3-204ENST00000552973 GOLGA2P5Q9HBQ8 144 aa12.64□□□□□ -0.39
NEK3-204ENST00000552973 DDX19AQ9NUU7 478 aaKnown RBP12.64□□□□□ -0.39
NEK3-204ENST00000552973 EPS15L1Q9UBC2 864 aa12.64□□□□□ -0.39
NEK3-204ENST00000552973 NOL7Q9UMY1 257 aaKnown RBP12.64□□□□□ -0.39
NEK3-204ENST00000552973 KMT2EQ8IZD2 1858 aa12.63□□□□□ -0.39
NEK3-204ENST00000552973 I3L4J1 428 aa12.63□□□□□ -0.39
NEK3-204ENST00000552973 K7ERI5 159 aa12.63□□□□□ -0.39
NEK3-204ENST00000552973 CCL16O15467 120 aa12.63□□□□□ -0.39
NEK3-204ENST00000552973 B3GAT3O94766 335 aa12.63□□□□□ -0.39
NEK3-204ENST00000552973 C8AP07357 584 aa12.63□□□□□ -0.39
NEK3-204ENST00000552973 RFX1P22670 979 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms