RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 GPS1Q13098 491 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 STX3Q13277 289 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 PCNX4Q63HM2 1172 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 BARGINQ6ZT62 677 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 TRIM67Q6ZTA4 783 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 RASGRP4Q8TDF6 673 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 ARL8AQ96BM9 186 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 NRBP2Q9NSY0 501 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 DNAJC17Q9NVM6 304 aaKnown RBP13.53□□□□□ -0.24
PTCH1-212ENST00000546744 ADA2Q9NZK5 511 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 BTBD7Q9P203 1132 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 HPSEQ9Y251 543 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 PXDNQ92626 1479 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 SLIT3O75094 1523 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 GSTA3Q16772 222 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 SLFN13Q68D06 897 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 CNBD2Q96M20 576 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 DTNAQ9Y4J8 743 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 POTEFA5A3E0 1075 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 POTEIP0CG38 1075 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 MYCLP12524 364 aaPredicted RBP13.53□□□□□ -0.24
PTCH1-212ENST00000546744 FGFR4P22455 802 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 POTEEQ6S8J3 1075 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 PPM1NQ8N819 430 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 TRIM63Q969Q1 353 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 KMT5AQ9NQR1 393 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 SMYD2Q9NRG4 433 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 BSDC1Q9NW68 430 aaPredicted RBP13.53□□□□□ -0.24
PTCH1-212ENST00000546744 ASNSD1Q9NWL6 643 aa13.53□□□□□ -0.24
PTCH1-212ENST00000546744 DDX20Q9UHI6 824 aaKnown RBP13.53□□□□□ -0.24
PTCH1-212ENST00000546744 E2F6O75461 281 aa13.52□□□□□ -0.24
PTCH1-212ENST00000546744 CLPTM1O96005 669 aa13.52□□□□□ -0.24
PTCH1-212ENST00000546744 FAM200BP0CF97 657 aa13.52□□□□□ -0.24
PTCH1-212ENST00000546744 MAPK7Q13164 816 aa13.52□□□□□ -0.24
PTCH1-212ENST00000546744 TFDP1Q14186 410 aa13.52□□□□□ -0.24
PTCH1-212ENST00000546744 CYTH1Q15438 398 aa13.52□□□□□ -0.24
PTCH1-212ENST00000546744 PGM2Q96G03 612 aa13.52□□□□□ -0.24
PTCH1-212ENST00000546744 THTPAQ9BU02 230 aa13.52□□□□□ -0.24
PTCH1-212ENST00000546744 MKNK1Q9BUB5 465 aa13.52□□□□□ -0.24
PTCH1-212ENST00000546744 SAR1AQ9NR31 198 aa13.52□□□□□ -0.24
PTCH1-212ENST00000546744 CDY2AQ9Y6F7 541 aa13.52□□□□□ -0.24
PTCH1-212ENST00000546744 CDY1Q9Y6F8 540 aa13.52□□□□□ -0.24
PTCH1-212ENST00000546744 HEG1Q9ULI3 1381 aa13.52□□□□□ -0.25
PTCH1-212ENST00000546744 DDX39AO00148 427 aaKnown RBP13.52□□□□□ -0.25
PTCH1-212ENST00000546744 PECAM1P16284 738 aaPredicted RBP13.52□□□□□ -0.25
PTCH1-212ENST00000546744 CACNA2D1P54289 1103 aa13.52□□□□□ -0.25
PTCH1-212ENST00000546744 ANKRD40Q6AI12 368 aa13.52□□□□□ -0.25
PTCH1-212ENST00000546744 CDKL3Q8IVW4 592 aaPredicted RBP13.52□□□□□ -0.25
PTCH1-212ENST00000546744 KIF2BQ8N4N8 673 aa13.52□□□□□ -0.25
PTCH1-212ENST00000546744 MREGQ8N565 214 aa13.52□□□□□ -0.25
PTCH1-212ENST00000546744 CNBD1Q8NA66 436 aa13.52□□□□□ -0.25
PTCH1-212ENST00000546744 PCYOX1LQ8NBM8 494 aa13.52□□□□□ -0.25
PTCH1-212ENST00000546744 AENQ8WTP8 325 aaKnown RBP13.52□□□□□ -0.25
PTCH1-212ENST00000546744 NPHS2Q9NP85 383 aa13.52□□□□□ -0.25
PTCH1-212ENST00000546744 A0A0A6YYK5 440 aaPredicted RBP13.52□□□□□ -0.25
PTCH1-212ENST00000546744 KIF28PB7ZC32 967 aa13.52□□□□□ -0.25
PTCH1-212ENST00000546744 PPIP5K2O43314 1243 aa13.52□□□□□ -0.25
PTCH1-212ENST00000546744 AASDHQ4L235 1098 aaPredicted RBP13.52□□□□□ -0.25
PTCH1-212ENST00000546744 RCOR2Q8IZ40 523 aa13.52□□□□□ -0.25
PTCH1-212ENST00000546744 FRMD8P1Q9BZ68 369 aaPredicted RBP13.52□□□□□ -0.25
PTCH1-212ENST00000546744 OLFML3Q9NRN5 406 aa13.52□□□□□ -0.25
PTCH1-212ENST00000546744 ENO1P06733 434 aaKnown RBP13.51□□□□□ -0.25
PTCH1-212ENST00000546744 PAX7P23759 505 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 TTKP33981 857 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 RAP1GDS1P52306 607 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 GABPAQ06546 454 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 FLOT2Q14254 428 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 NLRP10Q86W26 655 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 RIN3Q8TB24 985 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 ZNF212Q9UDV6 495 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 SMIM31A0A1B0GVY4 71 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 KIAA0391O15091 583 aaKnown RBP13.51□□□□□ -0.25
PTCH1-212ENST00000546744 P4HA2O15460 535 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 SLC29A2Q14542 456 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.51□□□□□ -0.25
PTCH1-212ENST00000546744 AGPAT1Q99943 283 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 EPS8L2Q9H6S3 715 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 PNPLA7Q6ZV29 1317 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 PSMA2P25787 234 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 BCAMP50895 628 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 POLGP54098 1239 aaPredicted RBP13.51□□□□□ -0.25
PTCH1-212ENST00000546744 SP4Q02446 784 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 KDSRQ06136 332 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 ZNF211Q13398 564 aaPredicted RBP13.51□□□□□ -0.25
PTCH1-212ENST00000546744 ADCK1Q86TW2 530 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 STK32AQ8WU08 396 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 PIGBQ92521 554 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 SH3GL2Q99962 352 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 BEGAINQ9BUH8 593 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 INTS2Q9H0H0 1204 aaKnown RBP13.51□□□□□ -0.25
PTCH1-212ENST00000546744 KANSL2Q9H9L4 492 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 CYP4F11Q9HBI6 524 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 WHRNQ9P202 907 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 LEMD3Q9Y2U8 911 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 TTLL3Q9Y4R7 772 aa13.51□□□□□ -0.25
PTCH1-212ENST00000546744 TRAPPC3O43617 180 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 SASH3O75995 380 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 SAT1P21673 171 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 SLC34A1Q06495 639 aa13.5□□□□□ -0.25
PTCH1-212ENST00000546744 RIPK1Q13546 671 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms