RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 VTA1Q9NP79 307 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 CYP26B1Q9NR63 512 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 AGPAT3Q9NRZ7 376 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 SLC5A4Q9NY91 659 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 AIPL1Q9NZN9 384 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 RBPJLQ9UBG7 517 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 DNAI1Q9UI46 699 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 FZD1Q9UP38 647 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 USP20Q9Y2K6 914 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 SIP14410 1827 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 SYNGAP1Q96PV0 1343 aa6.75□□□□□ -1.33
SYNE1-239ENST00000545694 ZMYM2Q9UBW7 1377 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 UQCRHLA0A096LP55 91 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 SOWAHDA6NJG2 315 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 USP27XA6NNY8 438 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 RBAK-RBAKDNI3L0D1 243 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 BACH1O14867 736 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 ZBTB39O15060 712 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 EXOC3O60645 756 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 LGR5O75473 907 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 AKAP3O75969 853 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 FARP2O94887 1054 aaPredicted RBP6.74□□□□□ -1.33
SYNE1-239ENST00000545694 STBD1O95210 358 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 LDHAP00338 332 aaKnown RBP6.74□□□□□ -1.33
SYNE1-239ENST00000545694 SERPING1P05155 500 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 UQCRHP07919 91 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 NMT1P30419 496 aaKnown RBP6.74□□□□□ -1.33
SYNE1-239ENST00000545694 CASQ1P31415 396 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 NAMPTP43490 491 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 PLA2G4AP47712 749 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 STAT5BP51692 787 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 EFNA5P52803 228 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 GNG11P61952 73 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 PRKCEQ02156 737 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 TTLL4Q14679 1199 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 LBRQ14739 615 aaKnown RBP6.74□□□□□ -1.33
SYNE1-239ENST00000545694 GRIN2CQ14957 1233 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 FAM102BQ5T8I3 360 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 SLFN12LQ6IEE8 588 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 SWSAP1Q6NVH7 229 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 WDR59Q6PJI9 974 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 RAD9BQ6WBX8 426 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 LINC00114Q6XXX2 140 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 TOGARAM2Q6ZUX3 1019 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 CYFIP1Q7L576 1253 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 RNF135Q8IUD6 432 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 DHX37Q8IY37 1157 aaKnown RBP6.74□□□□□ -1.33
SYNE1-239ENST00000545694 RNF10Q8N5U6 811 aaKnown RBP6.74□□□□□ -1.33
SYNE1-239ENST00000545694 TMEM161BQ8NDZ6 487 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 SMCR8Q8TEV9 937 aaPredicted RBP6.74□□□□□ -1.33
SYNE1-239ENST00000545694 SCFD2Q8WU76 684 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 TCP11Q8WWU5 503 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 SLC7A3Q8WY07 619 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 SLC35C1Q96A29 364 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 ERO1AQ96HE7 468 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 MAP7D2Q96T17 732 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 PAGR1Q9BTK6 254 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 FGFBP2Q9BYJ0 223 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 DEF6Q9H4E7 631 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 DHX33Q9H6R0 707 aaKnown RBP6.74□□□□□ -1.33
SYNE1-239ENST00000545694 NHEJ1Q9H9Q4 299 aaPredicted RBP6.74□□□□□ -1.33
SYNE1-239ENST00000545694 KMT5AQ9NQR1 393 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 AGPAT5Q9NUQ2 364 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 NDFIP2Q9NV92 336 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 DDX41Q9UJV9 622 aaKnown RBP6.74□□□□□ -1.33
SYNE1-239ENST00000545694 TBX20Q9UMR3 447 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 IVNS1ABPQ9Y6Y0 642 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 EVPLQ92817 2033 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 EMSYQ7Z589 1322 aa6.74□□□□□ -1.33
SYNE1-239ENST00000545694 RBM47A0AV96 593 aaKnown RBP6.73□□□□□ -1.33
SYNE1-239ENST00000545694 ANO9A1A5B4 782 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 CTAGE9A4FU28 777 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 RASSF10A6NK89 507 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 SFI1A8K8P3 1242 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 NKRFO15226 690 aaKnown RBP eCLIP6.73□□□□□ -1.33
SYNE1-239ENST00000545694 ASAP2O43150 1006 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 PJA2O43164 708 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 AKR1B10O60218 316 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 ZNF862O60290 1169 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 SLU7O95391 586 aaKnown RBP6.73□□□□□ -1.33
SYNE1-239ENST00000545694 PIGRP01833 764 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 TUBBP07437 444 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 FURINP09958 794 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 UCHL3P15374 230 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 FERP16591 822 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 HOXB4P17483 251 aaPredicted RBP6.73□□□□□ -1.33
SYNE1-239ENST00000545694 UBA1P22314 1058 aaKnown RBP6.73□□□□□ -1.33
SYNE1-239ENST00000545694 MAPK4P31152 587 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 PRKCIP41743 596 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 NPTX2P47972 431 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 VAV2P52735 878 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 POLGP54098 1239 aaPredicted RBP6.73□□□□□ -1.33
SYNE1-239ENST00000545694 PEX3P56589 373 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 INHBEP58166 350 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 CNTN2Q02246 1040 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 KIF5AQ12840 1032 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 BFSP1Q12934 665 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 LAMC2Q13753 1193 aa6.73□□□□□ -1.33
SYNE1-239ENST00000545694 MXD4Q14582 209 aaPredicted RBP6.73□□□□□ -1.33
SYNE1-239ENST00000545694 EMC2Q15006 297 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms