RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 PAIP2Q9BPZ3 127 aaKnown RBP16.13■□□□□ 0.17
USP28-214ENST00000545540 SEL1LQ9UBV2 794 aa16.13■□□□□ 0.17
USP28-214ENST00000545540 A6NNZ2 444 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 PI4K2BG5E9Z4 385 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 WNT7BP56706 349 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 KRT17Q04695 432 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 TUBB8Q3ZCM7 444 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 ATP13A4Q4VNC1 1196 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 ERMARDQ5T6L9 678 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 KAZNQ674X7 775 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 TLCD1Q96CP7 247 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 C9orf72Q96LT7 481 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 NAP1L3Q99457 506 aaPredicted RBP16.12■□□□□ 0.17
USP28-214ENST00000545540 RASAL2Q9UJF2 1139 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 ZNF536O15090 1300 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 RIPK2O43353 540 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 RRM1P23921 792 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 CAP2P40123 477 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 ACOT2P49753 483 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 EMC10Q5UCC4 262 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 TBC1D1Q86TI0 1168 aaPredicted RBP16.12■□□□□ 0.17
USP28-214ENST00000545540 OGFOD1Q8N543 542 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 ABCF3Q9NUQ8 709 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 ASTN2O75129 1339 aaPredicted RBP16.12■□□□□ 0.17
USP28-214ENST00000545540 LOC102724159A0A0B4J2E5 919 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 NPTX2P47972 431 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 CDR1P51861 262 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 PWP2Q15269 919 aaKnown RBP16.12■□□□□ 0.17
USP28-214ENST00000545540 HIBCHQ6NVY1 386 aaPredicted RBP16.12■□□□□ 0.17
USP28-214ENST00000545540 SV2AQ7L0J3 742 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 LARGE2Q8N3Y3 721 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 STRA6Q9BX79 667 aa16.12■□□□□ 0.17
USP28-214ENST00000545540 CDC42EP4Q9H3Q1 356 aaKnown RBP16.12■□□□□ 0.17
USP28-214ENST00000545540 ZNF831Q5JPB2 1677 aa16.11■□□□□ 0.17
USP28-214ENST00000545540 CEP350Q5VT06 3117 aa16.11■□□□□ 0.17
USP28-214ENST00000545540 ENTPD3O75355 529 aa16.11■□□□□ 0.17
USP28-214ENST00000545540 CLTAP09496 248 aa16.11■□□□□ 0.17
USP28-214ENST00000545540 HOOK3Q86VS8 718 aa16.11■□□□□ 0.17
USP28-214ENST00000545540 HAUS1Q96CS2 278 aa16.11■□□□□ 0.17
USP28-214ENST00000545540 FGFR1OP2Q9NVK5 253 aa16.11■□□□□ 0.17
USP28-214ENST00000545540 RIPK3Q9Y572 518 aa16.11■□□□□ 0.17
USP28-214ENST00000545540 SYNGAP1Q96PV0 1343 aa16.11■□□□□ 0.17
USP28-214ENST00000545540 CD58P19256 250 aa16.11■□□□□ 0.17
USP28-214ENST00000545540 MAPK4P31152 587 aa16.11■□□□□ 0.17
USP28-214ENST00000545540 AUHQ13825 339 aaKnown RBP16.11■□□□□ 0.17
USP28-214ENST00000545540 CYP4F22Q6NT55 531 aa16.11■□□□□ 0.17
USP28-214ENST00000545540 CYP4X1Q8N118 509 aa16.11■□□□□ 0.17
USP28-214ENST00000545540 KIF2BQ8N4N8 673 aa16.11■□□□□ 0.17
USP28-214ENST00000545540 FAM129AQ9BZQ8 928 aa16.11■□□□□ 0.17
USP28-214ENST00000545540 AGO4Q9HCK5 861 aaKnown RBP16.11■□□□□ 0.17
USP28-214ENST00000545540 MTRF1LQ9UGC7 380 aaKnown RBP16.11■□□□□ 0.17
USP28-214ENST00000545540 BAIAP2L1Q9UHR4 511 aa16.11■□□□□ 0.17
USP28-214ENST00000545540 ANKRD31Q8N7Z5 1873 aa16.11■□□□□ 0.17
USP28-214ENST00000545540 PFASO15067 1338 aa16.11■□□□□ 0.17
USP28-214ENST00000545540 ADGRA3Q8IWK6 1321 aa16.11■□□□□ 0.17
USP28-214ENST00000545540 HNRNPDLO14979 420 aaKnown RBP16.1■□□□□ 0.17
USP28-214ENST00000545540 CHRNA3P32297 505 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 EXOC3L1Q86VI1 746 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 FAM71AQ8IYT1 594 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 ATXN2LQ8WWM7 1075 aaKnown RBP16.1■□□□□ 0.17
USP28-214ENST00000545540 ZNF668Q96K58 619 aaPredicted RBP16.1■□□□□ 0.17
USP28-214ENST00000545540 RMDN3Q96TC7 470 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 TTC7AQ9ULT0 858 aaPredicted RBP16.1■□□□□ 0.17
USP28-214ENST00000545540 PCDHA3Q9Y5H8 950 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 PDE6CP51160 858 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 CALCOCO2Q13137 446 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 B3GNT9Q6UX72 402 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 ANO5Q75V66 913 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 ANKS1BQ7Z6G8 1248 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 HELQQ8TDG4 1101 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 PARD3BQ8TEW8 1205 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 CLEC4DQ8WXI8 215 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 C10orf88Q9H8K7 445 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 LY75O60449 1722 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 TCP11X1B4DZS4 312 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 DHX34Q14147 1143 aaKnown RBP16.1■□□□□ 0.17
USP28-214ENST00000545540 SIX1Q15475 284 aaPredicted RBP16.1■□□□□ 0.17
USP28-214ENST00000545540 ZNF394Q53GI3 561 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 SLC39A4Q6P5W5 647 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 CYB5D1Q6P9G0 228 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 FUKQ8N0W3 1084 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.1■□□□□ 0.17
USP28-214ENST00000545540 ZBTB45Q96K62 511 aaPredicted RBP16.1■□□□□ 0.17
USP28-214ENST00000545540 CEP170P1Q96L14 293 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 ZNF317Q96PQ6 595 aaPredicted RBP16.1■□□□□ 0.17
USP28-214ENST00000545540 C11orf70Q9BRQ4 267 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 TMEM206Q9H813 350 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 AAASQ9NRG9 546 aa16.1■□□□□ 0.17
USP28-214ENST00000545540 SLX4Q8IY92 1834 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 ECEL1O95672 775 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 RPSAP08865 295 aaKnown RBP16.09■□□□□ 0.17
USP28-214ENST00000545540 TCF4P15884 667 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 SCP2P22307 547 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 ADCY8P40145 1251 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 RWDD2BP57060 319 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 MPP2Q14168 576 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 FAM228AQ86W67 206 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 SYTL5Q8TDW5 730 aaPredicted RBP16.09■□□□□ 0.17
USP28-214ENST00000545540 AKT1S1Q96B36 256 aa16.09■□□□□ 0.17
USP28-214ENST00000545540 KMT5AQ9NQR1 393 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms