RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 H0YGN5 161 aa14.52□□□□□ -0.08
PTPN1-202ENST00000541713 KCNA4P22459 653 aa14.52□□□□□ -0.08
PTPN1-202ENST00000541713 BTNL9Q6UXG8 535 aa14.52□□□□□ -0.08
PTPN1-202ENST00000541713 ZSWIM1Q9BR11 485 aa14.52□□□□□ -0.08
PTPN1-202ENST00000541713 FAM114A2Q9NRY5 505 aa14.52□□□□□ -0.08
PTPN1-202ENST00000541713 R3HDM2Q9Y2K5 976 aaKnown RBP14.52□□□□□ -0.08
PTPN1-202ENST00000541713 NFS1Q9Y697 457 aa14.52□□□□□ -0.08
PTPN1-202ENST00000541713 DHX15O43143 795 aaKnown RBP14.52□□□□□ -0.09
PTPN1-202ENST00000541713 SCP2P22307 547 aa14.52□□□□□ -0.09
PTPN1-202ENST00000541713 CHKAP35790 457 aa14.52□□□□□ -0.09
PTPN1-202ENST00000541713 LIG4P49917 911 aa14.52□□□□□ -0.09
PTPN1-202ENST00000541713 PPP1R13LQ8WUF5 828 aa14.52□□□□□ -0.09
PTPN1-202ENST00000541713 RASAL2Q9UJF2 1139 aa14.52□□□□□ -0.09
PTPN1-202ENST00000541713 TBX20Q9UMR3 447 aa14.52□□□□□ -0.09
PTPN1-202ENST00000541713 ZNF536O15090 1300 aa14.52□□□□□ -0.09
PTPN1-202ENST00000541713 ZSCAN5DPP0CG00 497 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 PTENP60484 403 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 FMO1Q01740 532 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 KRT17Q04695 432 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 SMAD1Q15797 465 aaKnown RBP14.51□□□□□ -0.09
PTPN1-202ENST00000541713 FAM47EQ6ZV65 393 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 ZC3H3Q8IXZ2 948 aaKnown RBP14.51□□□□□ -0.09
PTPN1-202ENST00000541713 ARFGAP2Q8N6H7 521 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 OLIG1Q8TAK6 271 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 INTS9Q9NV88 658 aaKnown RBP14.51□□□□□ -0.09
PTPN1-202ENST00000541713 DMAC2Q9NW81 257 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 FEM1BQ9UK73 627 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.51□□□□□ -0.09
PTPN1-202ENST00000541713 ADGRA3Q8IWK6 1321 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 MAST2Q6P0Q8 1798 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 KIAA0391O15091 583 aaKnown RBP14.51□□□□□ -0.09
PTPN1-202ENST00000541713 ZNF862O60290 1169 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 VCAM1P19320 739 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 MFAP3P55082 362 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 SKOR1P84550 965 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 SLFN11Q7Z7L1 901 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 TCP11Q8WWU5 503 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 SEC16BQ96JE7 1060 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 SLITRK6Q9H5Y7 841 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 RAB20Q9NX57 234 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 SAE1Q9UBE0 346 aaPredicted RBP14.51□□□□□ -0.09
PTPN1-202ENST00000541713 ODF2LQ9ULJ1 636 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 RREB1Q92766 1687 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 PIK3CDO00329 1044 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 ICAM1P05362 532 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 SRGAP2CP0DJJ0 459 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 PGM5Q15124 567 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 LRRC34Q8IZ02 419 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 CACNA2D3Q8IZS8 1091 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 KIRREL3Q8IZU9 778 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 LRRN4Q8WUT4 740 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 CLEC4DQ8WXI8 215 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 TMEM206Q9H813 350 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.51□□□□□ -0.09
PTPN1-202ENST00000541713 PCDHB4Q9Y5E5 795 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 UMODL1Q5DID0 1318 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 WNK3Q9BYP7 1800 aa14.51□□□□□ -0.09
PTPN1-202ENST00000541713 ETS1P14921 441 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 KRT39Q6A163 491 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 JDP2Q8WYK2 163 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 TARS2Q9BW92 718 aaKnown RBP14.5□□□□□ -0.09
PTPN1-202ENST00000541713 RNF19AQ9NV58 838 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 MTRF1LQ9UGC7 380 aaKnown RBP14.5□□□□□ -0.09
PTPN1-202ENST00000541713 MTUS1Q9ULD2 1270 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 POC1B-GALNT4F8VUJ3 575 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 RASGRF2O14827 1237 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 SPAG7O75391 227 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 NR3C2P08235 984 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 CLTAP09496 248 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 TCF4P15884 667 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 PIK3CAP42336 1068 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 FBXL13Q8NEE6 735 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 PARD3BQ8TEW8 1205 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 ZNF526Q8TF50 670 aaPredicted RBP14.5□□□□□ -0.09
PTPN1-202ENST00000541713 CNTNAP1P78357 1384 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 RTN2O75298 545 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 FAM107AO95990 144 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 GH1P01241 217 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 YY1P25490 414 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 NLRP11P59045 1033 aaKnown RBP14.5□□□□□ -0.09
PTPN1-202ENST00000541713 PPP2R5AQ15172 486 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 MMS22LQ6ZRQ5 1243 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 WRNIP1Q96S55 665 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 PDCD2LQ9BRP1 358 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 CARD9Q9H257 536 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 SEL1LQ9UBV2 794 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 BAIAP2L1Q9UHR4 511 aa14.5□□□□□ -0.09
PTPN1-202ENST00000541713 DNM1LO00429 736 aa14.49□□□□□ -0.09
PTPN1-202ENST00000541713 BANF1O75531 89 aa14.49□□□□□ -0.09
PTPN1-202ENST00000541713 POLGP54098 1239 aaPredicted RBP14.49□□□□□ -0.09
PTPN1-202ENST00000541713 CNTN2Q02246 1040 aa14.49□□□□□ -0.09
PTPN1-202ENST00000541713 ZDHHC24Q6UX98 284 aa14.49□□□□□ -0.09
PTPN1-202ENST00000541713 TBC1D1Q86TI0 1168 aaPredicted RBP14.49□□□□□ -0.09
PTPN1-202ENST00000541713 SLC13A5Q86YT5 568 aaPredicted RBP14.49□□□□□ -0.09
PTPN1-202ENST00000541713 CCDC60Q8IWA6 550 aaPredicted RBP14.49□□□□□ -0.09
PTPN1-202ENST00000541713 RHOT2Q8IXI1 618 aa14.49□□□□□ -0.09
PTPN1-202ENST00000541713 SRRM1Q8IYB3 904 aaKnown RBP14.49□□□□□ -0.09
PTPN1-202ENST00000541713 CCDC13Q8IYE1 715 aa14.49□□□□□ -0.09
PTPN1-202ENST00000541713 CALR3Q96L12 384 aaKnown RBP14.49□□□□□ -0.09
PTPN1-202ENST00000541713 PAGR1Q9BTK6 254 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms