RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 TUSC3Q13454 348 aa15.62■□□□□ 0.09
SNHG1-213ENST00000540725 HSP90AA2PQ14568 343 aaPredicted RBP15.62■□□□□ 0.09
SNHG1-213ENST00000540725 TMEM132AQ24JP5 1023 aa15.62■□□□□ 0.09
SNHG1-213ENST00000540725 ASTLQ6HA08 431 aaPredicted RBP15.62■□□□□ 0.09
SNHG1-213ENST00000540725 PADI6Q6TGC4 694 aa15.62■□□□□ 0.09
SNHG1-213ENST00000540725 PALB2Q86YC2 1186 aa15.62■□□□□ 0.09
SNHG1-213ENST00000540725 GLYCTKQ8IVS8 523 aa15.62■□□□□ 0.09
SNHG1-213ENST00000540725 HDAC7Q8WUI4 952 aa15.62■□□□□ 0.09
SNHG1-213ENST00000540725 RIN2Q8WYP3 895 aaPredicted RBP15.62■□□□□ 0.09
SNHG1-213ENST00000540725 SMG7Q92540 1137 aaKnown RBP15.62■□□□□ 0.09
SNHG1-213ENST00000540725 STAMQ92783 540 aa15.62■□□□□ 0.09
SNHG1-213ENST00000540725 LLPHQ9BRT6 129 aaKnown RBP15.62■□□□□ 0.09
SNHG1-213ENST00000540725 FOXP1Q9H334 677 aaPredicted RBP15.62■□□□□ 0.09
SNHG1-213ENST00000540725 PLEKHA4Q9H4M7 779 aa15.62■□□□□ 0.09
SNHG1-213ENST00000540725 PDZD7Q9H5P4 517 aa15.62■□□□□ 0.09
SNHG1-213ENST00000540725 FNIP2Q9P278 1114 aa15.62■□□□□ 0.09
SNHG1-213ENST00000540725 CLUHO75153 1309 aa15.61■□□□□ 0.09
SNHG1-213ENST00000540725 MYO15AQ9UKN7 3530 aa15.61■□□□□ 0.09
SNHG1-213ENST00000540725 CITO14578 2027 aa15.61■□□□□ 0.09
SNHG1-213ENST00000540725 TGM5O43548 720 aa15.61■□□□□ 0.09
SNHG1-213ENST00000540725 TADA2AO75478 443 aa15.61■□□□□ 0.09
SNHG1-213ENST00000540725 SF3B1O75533 1304 aaKnown RBP eCLIP15.61■□□□□ 0.092e-7■■■■■ 35.3
SNHG1-213ENST00000540725 PRKCBP05771 671 aa15.61■□□□□ 0.09
SNHG1-213ENST00000540725 RPL17P18621 184 aaKnown RBP15.61■□□□□ 0.09
SNHG1-213ENST00000540725 CYP11B2P19099 503 aa15.61■□□□□ 0.09
SNHG1-213ENST00000540725 GBP2P32456 591 aaPredicted RBP15.61■□□□□ 0.09
SNHG1-213ENST00000540725 MYH11P35749 1972 aa15.61■□□□□ 0.09
SNHG1-213ENST00000540725 CREMQ03060 361 aa15.61■□□□□ 0.09
SNHG1-213ENST00000540725 PRPF4BQ13523 1007 aaKnown RBP15.61■□□□□ 0.09
SNHG1-213ENST00000540725 MAPK6Q16659 721 aa15.61■□□□□ 0.09
SNHG1-213ENST00000540725 TTC38Q5R3I4 469 aa15.61■□□□□ 0.09
SNHG1-213ENST00000540725 ZNF707Q96C28 371 aaPredicted RBP15.61■□□□□ 0.09
SNHG1-213ENST00000540725 PAAF1Q9BRP4 392 aa15.61■□□□□ 0.09
SNHG1-213ENST00000540725 CCDC113Q9H0I3 377 aa15.61■□□□□ 0.09
SNHG1-213ENST00000540725 SNTG2Q9NY99 539 aa15.61■□□□□ 0.09
SNHG1-213ENST00000540725 IGSF9Q9P2J2 1179 aa15.61■□□□□ 0.09
SNHG1-213ENST00000540725 DUSP12Q9UNI6 340 aa15.61■□□□□ 0.09
SNHG1-213ENST00000540725 GVINP1Q7Z2Y8 2422 aa15.6■□□□□ 0.09
SNHG1-213ENST00000540725 CASTOR2A6NHX0 329 aa15.6■□□□□ 0.09
SNHG1-213ENST00000540725 PTGESO14684 152 aa15.6■□□□□ 0.09
SNHG1-213ENST00000540725 RECQL4O94761 1208 aa15.6■□□□□ 0.09
SNHG1-213ENST00000540725 PAPLNO95428 1278 aa15.6■□□□□ 0.09
SNHG1-213ENST00000540725 EDN1P05305 212 aa15.6■□□□□ 0.09
SNHG1-213ENST00000540725 LIG1P18858 919 aa15.6■□□□□ 0.09
SNHG1-213ENST00000540725 NAMPTP43490 491 aa15.6■□□□□ 0.09
SNHG1-213ENST00000540725 CLCN5P51795 746 aa15.6■□□□□ 0.09
SNHG1-213ENST00000540725 PPP2R5AQ15172 486 aa15.6■□□□□ 0.09
SNHG1-213ENST00000540725 RTP2Q5QGT7 225 aa15.6■□□□□ 0.09
SNHG1-213ENST00000540725 HAUS3Q68CZ6 603 aa15.6■□□□□ 0.09
SNHG1-213ENST00000540725 LILRA6Q6PI73 481 aa15.6■□□□□ 0.09
SNHG1-213ENST00000540725 FLCNQ8NFG4 579 aa15.6■□□□□ 0.09
SNHG1-213ENST00000540725 FBXO18Q8NFZ0 1043 aa15.6■□□□□ 0.09
SNHG1-213ENST00000540725 DEPTORQ8TB45 409 aa15.6■□□□□ 0.09
SNHG1-213ENST00000540725 HASPINQ8TF76 798 aa15.6■□□□□ 0.09
SNHG1-213ENST00000540725 ADPGKQ9BRR6 497 aa15.6■□□□□ 0.09
SNHG1-213ENST00000540725 NT5C3AQ9H0P0 336 aa15.6■□□□□ 0.09
SNHG1-213ENST00000540725 PIDD1Q9HB75 910 aa15.6■□□□□ 0.09
SNHG1-213ENST00000540725 ZDHHC7Q9NXF8 308 aa15.6■□□□□ 0.09
SNHG1-213ENST00000540725 USP20Q9Y2K6 914 aa15.6■□□□□ 0.09
SNHG1-213ENST00000540725 MYH15Q9Y2K3 1946 aa15.59■□□□□ 0.09
SNHG1-213ENST00000540725 ACKR2O00590 384 aa15.59■□□□□ 0.09
SNHG1-213ENST00000540725 GFRA3O60609 400 aa15.59■□□□□ 0.09
SNHG1-213ENST00000540725 KIF4AO95239 1232 aa15.59■□□□□ 0.09
SNHG1-213ENST00000540725 THP07101 528 aa15.59■□□□□ 0.09
SNHG1-213ENST00000540725 MUTP22033 750 aa15.59■□□□□ 0.09
SNHG1-213ENST00000540725 CCT6AP40227 531 aaKnown RBP15.59■□□□□ 0.09
SNHG1-213ENST00000540725 RBM25P49756 843 aaKnown RBP15.59■□□□□ 0.09
SNHG1-213ENST00000540725 HMGN5P82970 282 aaKnown RBP15.59■□□□□ 0.09
SNHG1-213ENST00000540725 GNL2Q13823 731 aaKnown RBP15.59■□□□□ 0.09
SNHG1-213ENST00000540725 EEF1DP3Q658K8 133 aa15.59■□□□□ 0.09
SNHG1-213ENST00000540725 CWF19L1Q69YN2 538 aaKnown RBP15.59■□□□□ 0.09
SNHG1-213ENST00000540725 PRSS55Q6UWB4 352 aaPredicted RBP15.59■□□□□ 0.09
SNHG1-213ENST00000540725 NOSTRINQ8IVI9 506 aa15.59■□□□□ 0.09
SNHG1-213ENST00000540725 MYADMQ96S97 322 aa15.59■□□□□ 0.09
SNHG1-213ENST00000540725 CXCL16Q9H2A7 254 aa15.59■□□□□ 0.09
SNHG1-213ENST00000540725 EPS15L1Q9UBC2 864 aa15.59■□□□□ 0.09
SNHG1-213ENST00000540725 FBXL21Q9UKT6 434 aa15.59■□□□□ 0.09
SNHG1-213ENST00000540725 NARSO43776 548 aaKnown RBP15.58■□□□□ 0.08
SNHG1-213ENST00000540725 ST18O60284 1047 aa15.58■□□□□ 0.08
SNHG1-213ENST00000540725 TRAPPC10P48553 1259 aa15.58■□□□□ 0.08
SNHG1-213ENST00000540725 FXR2P51116 673 aaKnown RBP eCLIP15.58■□□□□ 0.08
SNHG1-213ENST00000540725 NAB2Q15742 525 aa15.58■□□□□ 0.08
SNHG1-213ENST00000540725 ECM1Q16610 540 aa15.58■□□□□ 0.08
SNHG1-213ENST00000540725 FAM171A1Q5VUB5 890 aa15.58■□□□□ 0.08
SNHG1-213ENST00000540725 FAM184AQ8NB25 1140 aa15.58■□□□□ 0.08
SNHG1-213ENST00000540725 RSAD2Q8WXG1 361 aa15.58■□□□□ 0.08
SNHG1-213ENST00000540725 IFT74Q96LB3 600 aa15.58■□□□□ 0.08
SNHG1-213ENST00000540725 TTPALQ9BTX7 342 aa15.58■□□□□ 0.08
SNHG1-213ENST00000540725 KIFC3Q9BVG8 833 aa15.58■□□□□ 0.08
SNHG1-213ENST00000540725 PRKD2Q9BZL6 878 aa15.58■□□□□ 0.08
SNHG1-213ENST00000540725 BHMT2Q9H2M3 363 aa15.58■□□□□ 0.08
SNHG1-213ENST00000540725 POLD4Q9HCU8 107 aa15.58■□□□□ 0.08
SNHG1-213ENST00000540725 NOL7Q9UMY1 257 aaKnown RBP15.58■□□□□ 0.08
SNHG1-213ENST00000540725 DMDP11532 3685 aa15.57■□□□□ 0.08
SNHG1-213ENST00000540725 EP300Q09472 2414 aaPredicted RBP15.57■□□□□ 0.08
SNHG1-213ENST00000540725 ZMYND10O75800 440 aa15.57■□□□□ 0.08
SNHG1-213ENST00000540725 NPR3P17342 541 aa15.57■□□□□ 0.08
SNHG1-213ENST00000540725 AOC1P19801 751 aa15.57■□□□□ 0.08
SNHG1-213ENST00000540725 EFNA5P52803 228 aa15.57■□□□□ 0.08
SNHG1-213ENST00000540725 NBR1Q14596 966 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms