RNA–Protein interactions for RNA: ENST00000540608.5

NPC1-202, Transcript of NPC intracellular cholesterol transporter 1, humanhuman

TSL 2

Gene NPC1, Length 2,790 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1-202ENST00000540608 BTBD6Q96KE9 485 aa13.18□□□□□ -0.3
NPC1-202ENST00000540608 TMEM117Q9H0C3 514 aa13.18□□□□□ -0.3
NPC1-202ENST00000540608 RANBP17Q9H2T7 1088 aaKnown RBP13.18□□□□□ -0.3
NPC1-202ENST00000540608 HOMER3Q9NSC5 361 aa13.18□□□□□ -0.3
NPC1-202ENST00000540608 WHRNQ9P202 907 aa13.18□□□□□ -0.3
NPC1-202ENST00000540608 UVRAGQ9P2Y5 699 aa13.18□□□□□ -0.3
NPC1-202ENST00000540608 YDJCA8MPS7 323 aa13.18□□□□□ -0.3
NPC1-202ENST00000540608 TCP10L2B9ZVM9 353 aa13.18□□□□□ -0.3
NPC1-202ENST00000540608 PDE6CP51160 858 aa13.18□□□□□ -0.3
NPC1-202ENST00000540608 SNRPFP62306 86 aaKnown RBP13.18□□□□□ -0.3
NPC1-202ENST00000540608 FMO1Q01740 532 aa13.18□□□□□ -0.3
NPC1-202ENST00000540608 CC2D2BQ6DHV5 1058 aa13.18□□□□□ -0.3
NPC1-202ENST00000540608 RNF207Q6ZRF8 634 aa13.18□□□□□ -0.3
NPC1-202ENST00000540608 SLC47A2Q86VL8 602 aa13.18□□□□□ -0.3
NPC1-202ENST00000540608 KREMEN1Q96MU8 473 aa13.18□□□□□ -0.3
NPC1-202ENST00000540608 MXRA8Q9BRK3 442 aa13.18□□□□□ -0.3
NPC1-202ENST00000540608 ARHGEF10LQ9HCE6 1279 aa13.18□□□□□ -0.3
NPC1-202ENST00000540608 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.18□□□□□ -0.3
NPC1-202ENST00000540608 GTF3C4Q9UKN8 822 aa13.18□□□□□ -0.3
NPC1-202ENST00000540608 C21orf2O43822 256 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 PLS3P13797 630 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 IFNAR2P48551 515 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 MXI1P50539 228 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 MFAP3P55082 362 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 HIBCHQ6NVY1 386 aaPredicted RBP13.17□□□□□ -0.3
NPC1-202ENST00000540608 CPNE8Q86YQ8 564 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 CCDC63Q8NA47 563 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 GIMAP7Q8NHV1 300 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 SHC3Q92529 594 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 SERPINB12Q96P63 405 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 CCDC113Q9H0I3 377 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 TMX2Q9Y320 296 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 CFAP73A6NFT4 308 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 FSCN2O14926 492 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 TP73O15350 636 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 SNX3O60493 162 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 ATP6V1G2O95670 118 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 P4HBP07237 508 aaKnown RBP13.17□□□□□ -0.3
NPC1-202ENST00000540608 ITIH2P19823 946 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 GTF2BQ00403 316 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 STYK1Q6J9G0 422 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 CCDC25Q86WR0 208 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 ZSWIM2Q8NEG5 633 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 CHURC1Q8WUH1 139 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 PSPC1Q8WXF1 523 aaKnown RBP13.17□□□□□ -0.3
NPC1-202ENST00000540608 ZNF653Q96CK0 615 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 CDC42EP4Q9H3Q1 356 aaKnown RBP13.17□□□□□ -0.3
NPC1-202ENST00000540608 AAASQ9NRG9 546 aa13.17□□□□□ -0.3
NPC1-202ENST00000540608 CLRN2A0PK11 232 aa13.16□□□□□ -0.3
NPC1-202ENST00000540608 APBA3O96018 575 aa13.16□□□□□ -0.3
NPC1-202ENST00000540608 OAS1P00973 400 aaKnown RBP13.16□□□□□ -0.3
NPC1-202ENST00000540608 EZRP15311 586 aaKnown RBP13.16□□□□□ -0.3
NPC1-202ENST00000540608 CYP11B1P15538 503 aa13.16□□□□□ -0.3
NPC1-202ENST00000540608 CDR2Q01850 454 aa13.16□□□□□ -0.3
NPC1-202ENST00000540608 CCDC38Q502W7 563 aa13.16□□□□□ -0.3
NPC1-202ENST00000540608 MIER3Q7Z3K6 550 aa13.16□□□□□ -0.3
NPC1-202ENST00000540608 PPM1KQ8N3J5 372 aa13.16□□□□□ -0.3
NPC1-202ENST00000540608 POP1Q99575 1024 aaKnown RBP13.16□□□□□ -0.3
NPC1-202ENST00000540608 PLVAPQ9BX97 442 aa13.16□□□□□ -0.3
NPC1-202ENST00000540608 ST6GALNAC4Q9H4F1 302 aa13.16□□□□□ -0.3
NPC1-202ENST00000540608 ACP6Q9NPH0 428 aa13.16□□□□□ -0.3
NPC1-202ENST00000540608 DDX39AO00148 427 aaKnown RBP13.16□□□□□ -0.3
NPC1-202ENST00000540608 NF2P35240 595 aa13.16□□□□□ -0.3
NPC1-202ENST00000540608 SF3A3Q12874 501 aaKnown RBP eCLIP13.16□□□□□ -0.31e-6■■■■□ 21.5
NPC1-202ENST00000540608 RIPK1Q13546 671 aa13.16□□□□□ -0.3
NPC1-202ENST00000540608 ZYXQ15942 572 aaKnown RBP13.16□□□□□ -0.3
NPC1-202ENST00000540608 LONRF1Q17RB8 773 aa13.16□□□□□ -0.3
NPC1-202ENST00000540608 RHBDF2Q6PJF5 856 aa13.16□□□□□ -0.3
NPC1-202ENST00000540608 SAMD1Q6SPF0 538 aaPredicted RBP13.16□□□□□ -0.3
NPC1-202ENST00000540608 HAUS6Q7Z4H7 955 aa13.16□□□□□ -0.3
NPC1-202ENST00000540608 ARHGEF2Q92974 986 aaKnown RBP13.16□□□□□ -0.3
NPC1-202ENST00000540608 DDX23Q9BUQ8 820 aaKnown RBP13.16□□□□□ -0.3
NPC1-202ENST00000540608 NOD2Q9HC29 1040 aa13.16□□□□□ -0.3
NPC1-202ENST00000540608 CLDN3O15551 220 aa13.15□□□□□ -0.3
NPC1-202ENST00000540608 ITGB5P18084 799 aa13.15□□□□□ -0.3
NPC1-202ENST00000540608 ATP5DP30049 168 aa13.15□□□□□ -0.3
NPC1-202ENST00000540608 KRT17Q04695 432 aa13.15□□□□□ -0.3
NPC1-202ENST00000540608 FAM133BQ5BKY9 247 aaKnown RBP13.15□□□□□ -0.3
NPC1-202ENST00000540608 ACAD10Q6JQN1 1059 aa13.15□□□□□ -0.3
NPC1-202ENST00000540608 C7orf43Q8WVR3 580 aa13.15□□□□□ -0.3
NPC1-202ENST00000540608 DYDC1Q8WWB3 177 aa13.15□□□□□ -0.3
NPC1-202ENST00000540608 SEMA4DQ92854 862 aa13.15□□□□□ -0.3
NPC1-202ENST00000540608 IWS1Q96ST2 819 aa13.15□□□□□ -0.3
NPC1-202ENST00000540608 HERC5Q9UII4 1024 aaKnown RBP13.15□□□□□ -0.3
NPC1-202ENST00000540608 USP15Q9Y4E8 981 aaPredicted RBP13.15□□□□□ -0.3
NPC1-202ENST00000540608 COL2A1P02458 1487 aaPredicted RBP13.15□□□□□ -0.3
NPC1-202ENST00000540608 RARRES1P49788 294 aa13.15□□□□□ -0.3
NPC1-202ENST00000540608 MAP2K1Q02750 393 aaPredicted RBP13.15□□□□□ -0.3
NPC1-202ENST00000540608 SGO2Q562F6 1265 aa13.15□□□□□ -0.3
NPC1-202ENST00000540608 SYDE1Q6ZW31 735 aaPredicted RBP13.15□□□□□ -0.3
NPC1-202ENST00000540608 HELQQ8TDG4 1101 aa13.15□□□□□ -0.3
NPC1-202ENST00000540608 C1orf54Q8WWF1 131 aa13.15□□□□□ -0.3
NPC1-202ENST00000540608 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.15□□□□□ -0.3
NPC1-202ENST00000540608 ABCF3Q9NUQ8 709 aa13.15□□□□□ -0.3
NPC1-202ENST00000540608 ZHX2Q9Y6X8 837 aa13.15□□□□□ -0.3
NPC1-202ENST00000540608 TMEM120BA0PK00 339 aa13.15□□□□□ -0.31
NPC1-202ENST00000540608 ACSL3O95573 720 aa13.15□□□□□ -0.31
NPC1-202ENST00000540608 ADRB2P07550 413 aa13.15□□□□□ -0.31
NPC1-202ENST00000540608 DLATP10515 647 aaKnown RBP13.15□□□□□ -0.31
NPC1-202ENST00000540608 ELF1P32519 619 aa13.15□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms