RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 CD300CQ08708 224 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 CDC16Q13042 620 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 AIFM3Q96NN9 605 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 LRRC27Q9C0I9 530 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 CCDC113Q9H0I3 377 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 EBF3Q9H4W6 596 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 SUGT1Q9Y2Z0 365 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.07□□□□□ -0.8
CLIP1-214ENST00000540539 RGPD3A6NKT7 1758 aaPredicted RBP10.07□□□□□ -0.8
CLIP1-214ENST00000540539 RGPD4Q7Z3J3 1758 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 C4BP0C0L5 1744 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 SMIM18P0DKX4 95 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 PTPN2P17706 415 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 PRKACBP22694 351 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 TCEA1P23193 301 aaKnown RBP10.07□□□□□ -0.8
CLIP1-214ENST00000540539 AFMP43652 599 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 SIGIRRQ6IA17 410 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 KSR2Q6VAB6 950 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 ANKRD13DQ6ZTN6 518 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 TMTC3Q6ZXV5 915 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 ANKMY2Q8IV38 441 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 PASD1Q8IV76 773 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 ALDH16A1Q8IZ83 802 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 TTLL11Q8NHH1 800 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 ZNF507Q8TCN5 953 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 FNBP1Q96RU3 617 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 UBAC1Q9BSL1 405 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 B3GNT4Q9C0J1 378 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 GLT8D2Q9H1C3 349 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 BOLA2Q9H3K6 86 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 MLXIPLQ9NP71 852 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 TRNAU1APQ9NX07 287 aaKnown RBP10.07□□□□□ -0.8
CLIP1-214ENST00000540539 AIPL1Q9NZN9 384 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 PPP1R9AQ9ULJ8 1098 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 SLC30A1Q9Y6M5 507 aa10.07□□□□□ -0.8
CLIP1-214ENST00000540539 MYH6P13533 1939 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 CFAP69A5D8W1 941 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 TRMUO75648 421 aaKnown RBP10.06□□□□□ -0.8
CLIP1-214ENST00000540539 FTCDO95954 541 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 FUCA1P04066 466 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 KPNA1P52294 538 aaPredicted RBP10.06□□□□□ -0.8
CLIP1-214ENST00000540539 KIF11P52732 1056 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 EN1Q05925 392 aaPredicted RBP10.06□□□□□ -0.8
CLIP1-214ENST00000540539 SPOPLQ6IQ16 392 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 USP49Q70CQ1 688 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 CYB5R4Q7L1T6 521 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 COL23A1Q86Y22 540 aaPredicted RBP10.06□□□□□ -0.8
CLIP1-214ENST00000540539 REM2Q8IYK8 340 aaPredicted RBP10.06□□□□□ -0.8
CLIP1-214ENST00000540539 CCDC82Q8N4S0 544 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 ZFP28Q8NHY6 868 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 PYROXD1Q8WU10 500 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 STMN2Q93045 179 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 LRRC37BQ96QE4 947 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 SNX25Q9H3E2 840 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 CUEDC2Q9H467 287 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 VPS54Q9P1Q0 977 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 MOSPD1Q9UJG1 213 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 MAP3K2Q9Y2U5 619 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 TMEM114B3SHH9 223 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 HSPA1AP0DMV8 641 aaKnown RBP10.06□□□□□ -0.8
CLIP1-214ENST00000540539 HSPA1BP0DMV9 641 aaKnown RBP10.06□□□□□ -0.8
CLIP1-214ENST00000540539 POLR2EP19388 210 aaKnown RBP10.06□□□□□ -0.8
CLIP1-214ENST00000540539 PTPN4P29074 926 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 CRABP2P29373 138 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 PHBP35232 272 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 SERPINB6P35237 376 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 YARSP54577 528 aaKnown RBP10.06□□□□□ -0.8
CLIP1-214ENST00000540539 CDR2Q01850 454 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 SUZ12Q15022 739 aaKnown RBP10.06□□□□□ -0.8
CLIP1-214ENST00000540539 RFPL4BQ6ZWI9 263 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 TAOK1Q7L7X3 1001 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 IRF2BP1Q8IU81 584 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 NOX5Q96PH1 765 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 CADM1Q9BY67 442 aaKnown RBP10.06□□□□□ -0.8
CLIP1-214ENST00000540539 EMILIN3Q9NT22 766 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 C6orf203Q9P0P8 240 aaPredicted RBP10.06□□□□□ -0.8
CLIP1-214ENST00000540539 FBXO2Q9UK22 296 aaPredicted RBP10.06□□□□□ -0.8
CLIP1-214ENST00000540539 ZBTB21Q9ULJ3 1066 aa10.06□□□□□ -0.8
CLIP1-214ENST00000540539 PACSIN2Q9UNF0 486 aaPredicted RBP10.06□□□□□ -0.8
CLIP1-214ENST00000540539 GNPATO15228 680 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 TFAP2AP05549 437 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 BAG6P46379 1132 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 KLK7P49862 253 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 ZNF132P52740 706 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 CTDSPL2Q05D32 466 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 C16orf72Q14CZ0 275 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 MTFR1Q15390 333 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 PCSK7Q16549 785 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 NADK2Q4G0N4 442 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 TYW1BQ6NUM6 668 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 NLRP9Q7RTR0 991 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 METTL25Q8N6Q8 603 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 CKAP2Q8WWK9 683 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 EDC3Q96F86 508 aaKnown RBP10.05□□□□□ -0.8
CLIP1-214ENST00000540539 CAMKK2Q96RR4 588 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 TGS1Q96RS0 853 aaKnown RBP10.05□□□□□ -0.8
CLIP1-214ENST00000540539 KLHL4Q9C0H6 718 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 PARVGQ9HBI0 331 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 PLGRKTQ9HBL7 147 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 MTMR7Q9Y216 660 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms