RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	SLC26A4	O43511	780 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	TBC1D12	O60347	775 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	PDE9A	O76083	593 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	PSMC2	P35998	433 aa	Known RBP	9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	PIK3CA	P42336	1068 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	RPL5	P46777	297 aa	Known RBP	9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	C6orf183	Q5T699	404 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	FAAH2	Q6GMR7	532 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	REXO1	Q8N1G1	1221 aa	Known RBP	9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	C19orf18	Q8NEA5	215 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	BORCS5	Q969J3	196 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	GLT8D2	Q9H1C3	349 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	TLR7	Q9NYK1	1049 aa	Known RBP	9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	ZNF652	Q9Y2D9	606 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	GPC6	Q9Y625	555 aa	Predicted RBP	9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	SOS2	Q07890	1332 aa	Predicted RBP	9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	LOC100653049	A0A140TA62	436 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	KRT34	O76011	436 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	SRP72	O76094	671 aa	Known RBP	9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	TTLL1	O95922	423 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	CCR3	P51677	355 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	SLC29A2	Q14542	456 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	SLC5A9	Q2M3M2	681 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	CASKIN2	Q8WXE0	1202 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	HEMGN	Q9BXL5	484 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	LEMD3	Q9Y2U8	911 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	MROH7	Q68CQ1	1323 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447		A0A1W2PQC6	194 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447		A6NJR5	290 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	TTLL13P	A6NNM8	815 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	CCNC	P24863	283 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	EPHB2	P29323	1055 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	TAGAP	Q8N103	731 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	SCAI	Q8N9R8	606 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	JMJD4	Q9H9V9	463 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	PKD2L1	Q9P0L9	805 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	SPDYE16	A6NNV3	312 aa	Predicted RBP	9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	CHRM1	P11229	460 aa	Predicted RBP	9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	SARS	P49591	514 aa	Known RBP	9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	SERPINH1	P50454	418 aa	Known RBP	9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	BLMH	Q13867	455 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	AOC3	Q16853	763 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	RUNDC3A	Q59EK9	446 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	NT5C1B	Q96P26	610 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	DHX36	Q9H2U1	1008 aa	Known RBP	9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	AIPL1	Q9NZN9	384 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	PIK3R2	O00459	728 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	VWA5A	O00534	786 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	CDC25A	P30304	524 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	GPS1	Q13098	491 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	TRIM71	Q2Q1W2	868 aa	Known RBP	9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	UTS2B	Q765I0	119 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	MTDH	Q86UE4	582 aa	Known RBP	9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	DENND6A	Q8IWF6	608 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	FANCB	Q8NB91	859 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	KCTD6	Q8NC69	237 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	LARP4B	Q92615	738 aa	Known RBP	9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	SERPINB12	Q96P63	405 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	BTBD10	Q9BSF8	475 aa		9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	MAGED2	Q9UNF1	606 aa	Predicted RBP	9.23	□□□□□ -0.93
YBX3-208	ENST00000540447	PRX	Q9BXM0	1461 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447		A0A1B0GTH6	734 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	CCDC78	A2IDD5	438 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	SNX2	O60749	519 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	KRT36	O76013	467 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	DLAT	P10515	647 aa	Known RBP	9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	ATP6V1E1	P36543	226 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	ABAT	P80404	500 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	PTPN12	Q05209	780 aa	Known RBP	9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	MAPRE1	Q15691	268 aa	Known RBP	9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	TRAPPC11	Q7Z392	1133 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	SETD3	Q86TU7	594 aa	Predicted RBP	9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	UNC5CL	Q8IV45	518 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	MAGED4	Q96JG8	741 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	LZTS2	Q9BRK4	669 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	PSMG1	O95456	288 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	NAA20	P61599	178 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	CYP4A11	Q02928	519 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	CYP4A22	Q5TCH4	519 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	ARHGAP17	Q68EM7	881 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	FAM45BP	Q6NSW5	357 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	PPP1R2P3	Q6NXS1	205 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	NEK5	Q6P3R8	708 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	KRT26	Q7Z3Y9	468 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	KBTBD2	Q8IY47	623 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	AHI1	Q8N157	1196 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	CAVIN3	Q969G5	261 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	DGCR14	Q96DF8	476 aa	Known RBP	9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	OTUD5	Q96G74	571 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	KLHL32	Q96NJ5	620 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	TMEM237	Q96Q45	408 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	GDA	Q9Y2T3	454 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	AK5	Q9Y6K8	562 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	SMARCA4	P51532	1647 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	ATXN2	Q99700	1313 aa	Known RBP	9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	ANGPT2	O15123	496 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	ZNF862	O60290	1169 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	NPTXR	O95502	500 aa		9.22	□□□□□ -0.93
YBX3-208	ENST00000540447	KRT19	P08727	400 aa		9.22	□□□□□ -0.93

Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms