RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 SPIRE1Q08AE8 756 aa17.45■□□□□ 0.38
CHMP4A-207ENST00000533523 CAPSQ13938 189 aa17.45■□□□□ 0.38
CHMP4A-207ENST00000533523 PCBP1Q15365 356 aaKnown RBP eCLIP17.45■□□□□ 0.38
CHMP4A-207ENST00000533523 GET4Q7L5D6 327 aaPredicted RBP17.45■□□□□ 0.38
CHMP4A-207ENST00000533523 PALB2Q86YC2 1186 aa17.45■□□□□ 0.38
CHMP4A-207ENST00000533523 SLFN12Q8IYM2 578 aa17.45■□□□□ 0.38
CHMP4A-207ENST00000533523 RNF168Q8IYW5 571 aaPredicted RBP17.45■□□□□ 0.38
CHMP4A-207ENST00000533523 ASAP3Q8TDY4 903 aa17.45■□□□□ 0.38
CHMP4A-207ENST00000533523 PIDD1Q9HB75 910 aa17.45■□□□□ 0.38
CHMP4A-207ENST00000533523 ZZEF1O43149 2961 aa17.45■□□□□ 0.38
CHMP4A-207ENST00000533523 NPTXRO95502 500 aa17.44■□□□□ 0.38
CHMP4A-207ENST00000533523 MBTD1Q05BQ5 628 aa17.44■□□□□ 0.38
CHMP4A-207ENST00000533523 SAFBQ15424 915 aaKnown RBP eCLIP17.44■□□□□ 0.38
CHMP4A-207ENST00000533523 KIAA0319Q5VV43 1072 aa17.44■□□□□ 0.38
CHMP4A-207ENST00000533523 FUT10Q6P4F1 479 aa17.44■□□□□ 0.38
CHMP4A-207ENST00000533523 CYP26C1Q6V0L0 522 aa17.44■□□□□ 0.38
CHMP4A-207ENST00000533523 ZNF707Q96C28 371 aaPredicted RBP17.44■□□□□ 0.38
CHMP4A-207ENST00000533523 INTS4Q96HW7 963 aaKnown RBP17.44■□□□□ 0.38
CHMP4A-207ENST00000533523 EIF2AK1Q9BQI3 630 aaKnown RBP17.44■□□□□ 0.38
CHMP4A-207ENST00000533523 COLEC11Q9BWP8 271 aa17.44■□□□□ 0.38
CHMP4A-207ENST00000533523 RXFP1Q9HBX9 757 aa17.44■□□□□ 0.38
CHMP4A-207ENST00000533523 MIOSQ9NXC5 875 aa17.44■□□□□ 0.38
CHMP4A-207ENST00000533523 EPS15L1Q9UBC2 864 aa17.44■□□□□ 0.38
CHMP4A-207ENST00000533523 GIT1Q9Y2X7 761 aa17.44■□□□□ 0.38
CHMP4A-207ENST00000533523 PATJQ8NI35 1801 aa17.43■□□□□ 0.38
CHMP4A-207ENST00000533523 KRBA1A5PL33 1030 aa17.43■□□□□ 0.38
CHMP4A-207ENST00000533523 B4GALT5O43286 388 aa17.43■□□□□ 0.38
CHMP4A-207ENST00000533523 ARF4P18085 180 aaPredicted RBP17.43■□□□□ 0.38
CHMP4A-207ENST00000533523 RPL17P18621 184 aaKnown RBP17.43■□□□□ 0.38
CHMP4A-207ENST00000533523 AKAP5P24588 427 aa17.43■□□□□ 0.38
CHMP4A-207ENST00000533523 AMHR2Q16671 573 aa17.43■□□□□ 0.38
CHMP4A-207ENST00000533523 EARS2Q5JPH6 523 aaKnown RBP17.43■□□□□ 0.38
CHMP4A-207ENST00000533523 CDR2LQ86X02 465 aaPredicted RBP17.43■□□□□ 0.38
CHMP4A-207ENST00000533523 RIN2Q8WYP3 895 aaPredicted RBP17.43■□□□□ 0.38
CHMP4A-207ENST00000533523 RABGGTAQ92696 567 aa17.43■□□□□ 0.38
CHMP4A-207ENST00000533523 CNTNAP3BQ96NU0 1288 aa17.43■□□□□ 0.38
CHMP4A-207ENST00000533523 RHOBTB2Q9BYZ6 727 aa17.43■□□□□ 0.38
CHMP4A-207ENST00000533523 CNTNAP3Q9BZ76 1288 aa17.43■□□□□ 0.38
CHMP4A-207ENST00000533523 POLR3FQ9H1D9 316 aaPredicted RBP17.43■□□□□ 0.38
CHMP4A-207ENST00000533523 PLEKHA4Q9H4M7 779 aa17.43■□□□□ 0.38
CHMP4A-207ENST00000533523 TBC1D17Q9HA65 648 aa17.43■□□□□ 0.38
CHMP4A-207ENST00000533523 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.43■□□□□ 0.38
CHMP4A-207ENST00000533523 R4GN57 208 aa17.43■□□□□ 0.38
CHMP4A-207ENST00000533523 SPEGQ15772 3267 aa17.43■□□□□ 0.38
CHMP4A-207ENST00000533523 ASPMQ8IZT6 3477 aa17.43■□□□□ 0.38
CHMP4A-207ENST00000533523 TGM5O43548 720 aa17.42■□□□□ 0.38
CHMP4A-207ENST00000533523 EFEMP2O95967 443 aa17.42■□□□□ 0.38
CHMP4A-207ENST00000533523 SRFP11831 508 aa17.42■□□□□ 0.38
CHMP4A-207ENST00000533523 GRIK3Q13003 919 aa17.42■□□□□ 0.38
CHMP4A-207ENST00000533523 NR5A1Q13285 461 aa17.42■□□□□ 0.38
CHMP4A-207ENST00000533523 CALCRLQ16602 461 aa17.42■□□□□ 0.38
CHMP4A-207ENST00000533523 USP41Q3LFD5 358 aa17.42■□□□□ 0.38
CHMP4A-207ENST00000533523 IFNLR1Q8IU57 520 aaPredicted RBP17.42■□□□□ 0.38
CHMP4A-207ENST00000533523 DIS3L2Q8IYB7 885 aaKnown RBP17.42■□□□□ 0.38
CHMP4A-207ENST00000533523 KIAA2013Q8IYS2 634 aa17.42■□□□□ 0.38
CHMP4A-207ENST00000533523 FAM184AQ8NB25 1140 aa17.42■□□□□ 0.38
CHMP4A-207ENST00000533523 C8orf76Q96K31 380 aa17.42■□□□□ 0.38
CHMP4A-207ENST00000533523 GPR62Q9BZJ7 368 aa17.42■□□□□ 0.38
CHMP4A-207ENST00000533523 ZDHHC7Q9NXF8 308 aa17.42■□□□□ 0.38
CHMP4A-207ENST00000533523 KLK14Q9P0G3 267 aa17.42■□□□□ 0.38
CHMP4A-207ENST00000533523 CACNG4Q9UBN1 327 aa17.42■□□□□ 0.38
CHMP4A-207ENST00000533523 WNT16Q9UBV4 365 aa17.42■□□□□ 0.38
CHMP4A-207ENST00000533523 PARP2Q9UGN5 583 aa17.42■□□□□ 0.38
CHMP4A-207ENST00000533523 ADAM28Q9UKQ2 775 aa17.42■□□□□ 0.38
CHMP4A-207ENST00000533523 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.42■□□□□ 0.38
CHMP4A-207ENST00000533523 CACNA1GO43497 2377 aa17.42■□□□□ 0.38
CHMP4A-207ENST00000533523 LRRIQ4A6NIV6 560 aa17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 USO1O60763 962 aaKnown RBP17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 DGAT1O75907 488 aa17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 SLITRK3O94933 977 aa17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 GLRA2P23416 452 aa17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 FOSBP53539 338 aa17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 CREMQ03060 361 aa17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 SPECC1Q5M775 1068 aa17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 SLC27A1Q6PCB7 646 aa17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 SLC44A3Q8N4M1 653 aa17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 DCLK2Q8N568 766 aa17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 ST13P5Q8NFI4 369 aaPredicted RBP17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 KCNG4Q8TDN1 519 aa17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 GPR152Q8TDT2 470 aa17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 HASPINQ8TF76 798 aa17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 HDAC7Q8WUI4 952 aa17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 TNFRSF25Q93038 417 aa17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 NT5C3AQ9H0P0 336 aa17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 CHST7Q9NS84 486 aa17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 SMC3Q9UQE7 1217 aa17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 KIF3AQ9Y496 699 aa17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 SF3B1O75533 1304 aaKnown RBP eCLIP17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 WDFY3Q8IZQ1 3526 aa17.41■□□□□ 0.38
CHMP4A-207ENST00000533523 ZMYM2Q9UBW7 1377 aa17.4■□□□□ 0.38
CHMP4A-207ENST00000533523 BAHCC1Q9P281 2608 aa17.4■□□□□ 0.38
CHMP4A-207ENST00000533523 PRSS55Q6UWB4 352 aaPredicted RBP17.4■□□□□ 0.38
CHMP4A-207ENST00000533523 NXPE3Q969Y0 559 aa17.4■□□□□ 0.38
CHMP4A-207ENST00000533523 PRKD2Q9BZL6 878 aa17.4■□□□□ 0.38
CHMP4A-207ENST00000533523 ARHGEF3Q9NR81 526 aa17.4■□□□□ 0.38
CHMP4A-207ENST00000533523 ANKEF1Q9NU02 776 aa17.4■□□□□ 0.38
CHMP4A-207ENST00000533523 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.4■□□□□ 0.38
CHMP4A-207ENST00000533523 FNIP2Q9P278 1114 aa17.4■□□□□ 0.38
CHMP4A-207ENST00000533523 NOTCH4Q99466 2003 aa17.39■□□□□ 0.37
CHMP4A-207ENST00000533523 CASTOR2A6NHX0 329 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms