RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 STRA6Q9BX79 667 aa16.47■□□□□ 0.23
CPSF1-208ENST00000532560 PANK4Q9NVE7 773 aa16.47■□□□□ 0.23
CPSF1-208ENST00000532560 MIOSQ9NXC5 875 aa16.47■□□□□ 0.23
CPSF1-208ENST00000532560 KLK14Q9P0G3 267 aa16.47■□□□□ 0.23
CPSF1-208ENST00000532560 GDAQ9Y2T3 454 aa16.47■□□□□ 0.23
CPSF1-208ENST00000532560 NT5C1B-RDH14C9J2C7 533 aa16.46■□□□□ 0.23
CPSF1-208ENST00000532560 PTGESO14684 152 aa16.46■□□□□ 0.23
CPSF1-208ENST00000532560 FSCN2O14926 492 aa16.46■□□□□ 0.23
CPSF1-208ENST00000532560 ACTN4O43707 911 aaKnown RBP16.46■□□□□ 0.23
CPSF1-208ENST00000532560 LIG4P49917 911 aa16.46■□□□□ 0.23
CPSF1-208ENST00000532560 COASYQ13057 564 aa16.46■□□□□ 0.23
CPSF1-208ENST00000532560 ALCAMQ13740 583 aa16.46■□□□□ 0.23
CPSF1-208ENST00000532560 TCEAL5Q5H9L2 206 aa16.46■□□□□ 0.23
CPSF1-208ENST00000532560 ZBTB33Q86T24 672 aa16.46■□□□□ 0.23
CPSF1-208ENST00000532560 CEP120Q8N960 986 aa16.46■□□□□ 0.23
CPSF1-208ENST00000532560 BCL7CQ8WUZ0 217 aaPredicted RBP16.46■□□□□ 0.23
CPSF1-208ENST00000532560 STAMQ92783 540 aa16.46■□□□□ 0.23
CPSF1-208ENST00000532560 ZBTB45Q96K62 511 aaPredicted RBP16.46■□□□□ 0.23
CPSF1-208ENST00000532560 C7orf25Q9BPX7 421 aa16.46■□□□□ 0.23
CPSF1-208ENST00000532560 TCHPQ9BT92 498 aa16.46■□□□□ 0.23
CPSF1-208ENST00000532560 CCDC94Q9BW85 323 aaPredicted RBP16.46■□□□□ 0.23
CPSF1-208ENST00000532560 MRPL44Q9H9J2 332 aaKnown RBP16.46■□□□□ 0.23
CPSF1-208ENST00000532560 TOPORSQ9NS56 1045 aaPredicted RBP16.46■□□□□ 0.23
CPSF1-208ENST00000532560 THEGQ9P2T0 379 aa16.46■□□□□ 0.23
CPSF1-208ENST00000532560 USP25Q9UHP3 1055 aa16.46■□□□□ 0.23
CPSF1-208ENST00000532560 PUF60Q9UHX1 559 aaKnown RBP16.46■□□□□ 0.23
CPSF1-208ENST00000532560 CUL9Q8IWT3 2517 aa16.46■□□□□ 0.22
CPSF1-208ENST00000532560 A0A1B0GVL5 298 aa16.45■□□□□ 0.22
CPSF1-208ENST00000532560 CLDN3O15551 220 aa16.45■□□□□ 0.22
CPSF1-208ENST00000532560 SLFN14P0C7P3 912 aa16.45■□□□□ 0.22
CPSF1-208ENST00000532560 IRS1P35568 1242 aa16.45■□□□□ 0.22
CPSF1-208ENST00000532560 YARSP54577 528 aaKnown RBP16.45■□□□□ 0.22
CPSF1-208ENST00000532560 ASIC1P78348 528 aa16.45■□□□□ 0.22
CPSF1-208ENST00000532560 COL19A1Q14993 1142 aa16.45■□□□□ 0.22
CPSF1-208ENST00000532560 SKIV2LQ15477 1246 aaKnown RBP16.45■□□□□ 0.22
CPSF1-208ENST00000532560 ZC2HC1CQ53FD0 456 aaPredicted RBP16.45■□□□□ 0.22
CPSF1-208ENST00000532560 HERC4Q5GLZ8 1057 aaPredicted RBP16.45■□□□□ 0.22
CPSF1-208ENST00000532560 DDX53Q86TM3 631 aaKnown RBP16.45■□□□□ 0.22
CPSF1-208ENST00000532560 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.45■□□□□ 0.22
CPSF1-208ENST00000532560 CEP57L1Q8IYX8 460 aa16.45■□□□□ 0.22
CPSF1-208ENST00000532560 PPP2R3CQ969Q6 453 aa16.45■□□□□ 0.22
CPSF1-208ENST00000532560 SNX27Q96L92 541 aa16.45■□□□□ 0.22
CPSF1-208ENST00000532560 GDPD2Q9HCC8 539 aa16.45■□□□□ 0.22
CPSF1-208ENST00000532560 PRDM6Q9NQX0 595 aa16.45■□□□□ 0.22
CPSF1-208ENST00000532560 STK39Q9UEW8 545 aa16.45■□□□□ 0.22
CPSF1-208ENST00000532560 PRUNE2Q8WUY3 3088 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 MYO7AQ13402 2215 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 NRP1O14786 923 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 NR1I2O75469 434 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 CSPG5O95196 566 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 GCNT3O95395 438 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 ALDH2P05091 517 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 THP07101 528 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 HARSP12081 509 aaKnown RBP16.44■□□□□ 0.22
CPSF1-208ENST00000532560 ERVFC1P60507 584 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 TUSC3Q13454 348 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 XKR4Q5GH76 650 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 L1TD1Q5T7N2 865 aaKnown RBP16.44■□□□□ 0.22
CPSF1-208ENST00000532560 SLC39A4Q6P5W5 647 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 ACAP3Q96P50 834 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 PPP1R10Q96QC0 940 aaKnown RBP16.44■□□□□ 0.22
CPSF1-208ENST00000532560 TCF25Q9BQ70 676 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 HAPLN2Q9GZV7 340 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 NGRNQ9NPE2 291 aaKnown RBP16.44■□□□□ 0.22
CPSF1-208ENST00000532560 ENTPD7Q9NQZ7 604 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 MARCH5Q9NX47 278 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 TBC1D7Q9P0N9 293 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 SERTAD1Q9UHV2 236 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 COG5Q9UP83 839 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 FAN1Q9Y2M0 1017 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 PRG3Q9Y2Y8 225 aaPredicted RBP16.44■□□□□ 0.22
CPSF1-208ENST00000532560 PCDHB13Q9Y5F0 798 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 REV3LO60673 3130 aa16.44■□□□□ 0.22
CPSF1-208ENST00000532560 A0A0B4J269 797 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 NCK2O43639 380 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 MATR3P43243 847 aaKnown RBP eCLIP16.43■□□□□ 0.22
CPSF1-208ENST00000532560 SYKP43405 635 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 OR1G1P47890 313 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 CASP5P51878 434 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 OSTNP61366 133 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 EHHADHQ08426 723 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 HYAL1Q12794 435 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 NAB2Q15742 525 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 KYAT1Q16773 422 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 ALKAL1Q6UXT8 129 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 UNC13DQ70J99 1090 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 FSIP1Q8NA03 581 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 HLA-CQ95604 372 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 VN1R3Q9BXE9 311 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 FGFBP2Q9BYJ0 223 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 ZBP1Q9H171 429 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 CXCL16Q9H2A7 254 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 CNTN3Q9P232 1028 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 EXOC7Q9UPT5 735 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 PCDHGC5Q9Y5F6 944 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 STYXL1Q9Y6J8 313 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 CITO14578 2027 aa16.43■□□□□ 0.22
CPSF1-208ENST00000532560 FSD2A1L4K1 749 aa16.42■□□□□ 0.22
CPSF1-208ENST00000532560 OGTO15294 1046 aa16.42■□□□□ 0.22
CPSF1-208ENST00000532560 FAM189A1O60320 539 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms