RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	PCMTD1	Q96MG8	357 aa	Predicted RBP	10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	DNAJC7	Q99615	494 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	NFKBIZ	Q9BYH8	718 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	UBE2O	Q9C0C9	1292 aa	Known RBP	10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	ERVK-5	Q9HDB9	667 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	CGN	Q9P2M7	1197 aa	Known RBP	10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	MYO1A	Q9UBC5	1043 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	ST3GAL5	Q9UNP4	418 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	PHLPP2	Q6ZVD8	1323 aa		10.3	□□□□□ -0.76
NXF1-209	ENST00000531474	DENND3	A2RUS2	1198 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474		H0YCG3	227 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	IPO7	O95373	1038 aa	Known RBP	10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	FGB	P02675	491 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	PRKCB	P05771	671 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	ACTN1	P12814	892 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	ABCD1	P33897	745 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	CYLC1	P35663	651 aa	Predicted RBP	10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	FXR1	P51114	621 aa	Known RBP eCLIP	10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	EFNA5	P52803	228 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	NCKAP1L	P55160	1127 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	SNRPF	P62306	86 aa	Known RBP	10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	TUBB4B	P68371	445 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	MYBPC2	Q14324	1141 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	MAPK6	Q16659	721 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	TMEM132A	Q24JP5	1023 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	TCTN1	Q2MV58	587 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	MIIP	Q5JXC2	388 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	ZNF365	Q70YC5	407 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	C16orf59	Q7L2K0	433 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	EPM2AIP1	Q7L775	607 aa	Predicted RBP	10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	OTOP2	Q7RTS6	562 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	HAUS6	Q7Z4H7	955 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	TMEM161B	Q8NDZ6	487 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	SCFD1	Q8WVM8	642 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	ZNF592	Q92610	1267 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	HPS3	Q969F9	1004 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	VWCE	Q96DN2	955 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	GDF15	Q99988	308 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	KCTD10	Q9H3F6	313 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	MRPL44	Q9H9J2	332 aa	Known RBP	10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	TYW1	Q9NV66	732 aa	Known RBP	10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	PRMT7	Q9NVM4	692 aa	Predicted RBP	10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	ARHGAP28	Q9P2N2	729 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	ADGRG1	Q9Y653	693 aa		10.29	□□□□□ -0.76
NXF1-209	ENST00000531474	SI	P14410	1827 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	DNAH12	Q6ZR08	3092 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	TTC26	A0AVF1	554 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	USP27X	A6NNY8	438 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	ZBBX	A8MT70	800 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474		K7ERI5	159 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	RIOK3	O14730	519 aa	Known RBP	10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	SLC16A3	O15427	465 aa	Known RBP	10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	B4GALT5	O43286	388 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	TSPAN1	O60635	241 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	GCNT3	O95395	438 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	IBSP	P21815	317 aa	Predicted RBP	10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	NMT1	P30419	496 aa	Known RBP	10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	CASQ1	P31415	396 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	HNRNPH3	P31942	346 aa	Known RBP	10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	NCBP1	Q09161	790 aa	Known RBP	10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	STRN3	Q13033	797 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	PRPF4B	Q13523	1007 aa	Known RBP	10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	IKBKE	Q14164	716 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	PCBP1	Q15365	356 aa	Known RBP eCLIP	10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	MEA1	Q16626	185 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	TMEM240	Q5SV17	173 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	ZNF662	Q6ZS27	426 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	LRRC55	Q6ZSA7	311 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	NEK11	Q8NG66	645 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	CPB2	Q96IY4	423 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	10.28	□□□□□ -0.76	4e-7	■□□□□ 9
NXF1-209	ENST00000531474	NTPCR	Q9BSD7	190 aa	Known RBP	10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	FGFBP2	Q9BYJ0	223 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	CCDC113	Q9H0I3	377 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	MTIF3	Q9H2K0	278 aa	Known RBP	10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	AGPAT5	Q9NUQ2	364 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	PIN4	Q9Y237	131 aa	Known RBP	10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	USP20	Q9Y2K6	914 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	DAAM1	Q9Y4D1	1078 aa		10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	EPN1	Q9Y6I3	576 aa	Predicted RBP	10.28	□□□□□ -0.76
NXF1-209	ENST00000531474	ABHD14A-ACY1	A0A1B0GW23	586 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	CTIF	O43310	598 aa	Known RBP	10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	KIF5C	O60282	957 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	MGEA5	O60502	916 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	BAIAP3	O94812	1187 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	MYB	P10242	640 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	EPB41	P11171	864 aa	Known RBP	10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	ZSCAN20	P17040	1043 aa	Predicted RBP	10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	SCP2	P22307	547 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	CASP5	P51878	434 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	AMHR2	Q16671	573 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	FAM187B	Q17R55	369 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	C9orf50	Q5SZB4	431 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	CHRDL2	Q6WN34	429 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	SYT10	Q6XYQ8	523 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	HS2ST1	Q7LGA3	356 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	TAS1R3	Q7RTX0	852 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	ZNF720	Q7Z2F6	126 aa		10.27	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms