RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 KCNJ1P48048 391 aa20.66■□□□□ 0.9
VPS28-213ENST00000530983 MFAP3P55082 362 aa20.66■□□□□ 0.9
VPS28-213ENST00000530983 SNRPFP62306 86 aaKnown RBP20.66■□□□□ 0.9
VPS28-213ENST00000530983 ADCY2Q08462 1091 aa20.66■□□□□ 0.9
VPS28-213ENST00000530983 SNRNP35Q16560 246 aaKnown RBP20.66■□□□□ 0.9
VPS28-213ENST00000530983 C6orf118Q5T5N4 469 aa20.66■□□□□ 0.9
VPS28-213ENST00000530983 MIGA2Q7L4E1 593 aa20.66■□□□□ 0.9
VPS28-213ENST00000530983 HELQQ8TDG4 1101 aa20.66■□□□□ 0.9
VPS28-213ENST00000530983 TMEM109Q9BVC6 243 aa20.66■□□□□ 0.9
VPS28-213ENST00000530983 SLC40A1Q9NP59 571 aa20.66■□□□□ 0.9
VPS28-213ENST00000530983 MTUS1Q9ULD2 1270 aa20.66■□□□□ 0.9
VPS28-213ENST00000530983 PPIP5K2O43314 1243 aa20.66■□□□□ 0.9
VPS28-213ENST00000530983 AGTP01019 485 aa20.66■□□□□ 0.9
VPS28-213ENST00000530983 RARGP13631 454 aa20.66■□□□□ 0.9
VPS28-213ENST00000530983 C12orf50Q8NA57 414 aaPredicted RBP20.66■□□□□ 0.9
VPS28-213ENST00000530983 CCT6BQ92526 530 aa20.66■□□□□ 0.9
VPS28-213ENST00000530983 CCDC114Q96M63 670 aa20.66■□□□□ 0.9
VPS28-213ENST00000530983 SLMAPQ14BN4 828 aa20.65■□□□□ 0.9
VPS28-213ENST00000530983 LACTB2Q53H82 288 aaPredicted RBP20.65■□□□□ 0.9
VPS28-213ENST00000530983 TNFAIP8L3Q5GJ75 292 aa20.65■□□□□ 0.9
VPS28-213ENST00000530983 TRMT1LQ7Z2T5 733 aaKnown RBP20.65■□□□□ 0.9
VPS28-213ENST00000530983 ZKSCAN4Q969J2 545 aaPredicted RBP20.65■□□□□ 0.9
VPS28-213ENST00000530983 CCDC127Q96BQ5 260 aa20.65■□□□□ 0.9
VPS28-213ENST00000530983 SAAL1Q96ER3 474 aa20.65■□□□□ 0.9
VPS28-213ENST00000530983 POP1Q99575 1024 aaKnown RBP20.65■□□□□ 0.9
VPS28-213ENST00000530983 KLC4Q9NSK0 619 aa20.65■□□□□ 0.9
VPS28-213ENST00000530983 UVRAGQ9P2Y5 699 aa20.65■□□□□ 0.9
VPS28-213ENST00000530983 PASKQ96RG2 1323 aa20.65■□□□□ 0.9
VPS28-213ENST00000530983 APBA3O96018 575 aa20.65■□□□□ 0.9
VPS28-213ENST00000530983 SLCO1A2P46721 670 aa20.65■□□□□ 0.9
VPS28-213ENST00000530983 PSEN1P49768 467 aa20.65■□□□□ 0.9
VPS28-213ENST00000530983 RWDD2BP57060 319 aa20.65■□□□□ 0.9
VPS28-213ENST00000530983 CDR2Q01850 454 aa20.65■□□□□ 0.9
VPS28-213ENST00000530983 MTMR1Q13613 665 aa20.65■□□□□ 0.9
VPS28-213ENST00000530983 PCNX4Q63HM2 1172 aa20.65■□□□□ 0.9
VPS28-213ENST00000530983 KRT39Q6A163 491 aa20.65■□□□□ 0.9
VPS28-213ENST00000530983 NSMFQ6X4W1 530 aa20.65■□□□□ 0.9
VPS28-213ENST00000530983 CYFIP1Q7L576 1253 aa20.65■□□□□ 0.9
VPS28-213ENST00000530983 PARD3BQ8TEW8 1205 aa20.65■□□□□ 0.9
VPS28-213ENST00000530983 PSPC1Q8WXF1 523 aaKnown RBP20.65■□□□□ 0.9
VPS28-213ENST00000530983 CNKSR1Q969H4 720 aa20.65■□□□□ 0.9
VPS28-213ENST00000530983 RUNDC3BQ96NL0 473 aa20.65■□□□□ 0.9
VPS28-213ENST00000530983 TMEM39BQ9GZU3 492 aa20.65■□□□□ 0.9
VPS28-213ENST00000530983 COQ4Q9Y3A0 265 aa20.65■□□□□ 0.9
VPS28-213ENST00000530983 RNF207Q6ZRF8 634 aa20.64■□□□□ 0.89
VPS28-213ENST00000530983 DDX1Q92499 740 aaKnown RBP20.64■□□□□ 0.89
VPS28-213ENST00000530983 IWS1Q96ST2 819 aa20.64■□□□□ 0.89
VPS28-213ENST00000530983 TULP1O00294 542 aaPredicted RBP20.64■□□□□ 0.89
VPS28-213ENST00000530983 TP73O15350 636 aa20.64■□□□□ 0.89
VPS28-213ENST00000530983 GRIN3BO60391 1043 aa20.64■□□□□ 0.89
VPS28-213ENST00000530983 SCTRP47872 440 aa20.64■□□□□ 0.89
VPS28-213ENST00000530983 PDE6CP51160 858 aa20.64■□□□□ 0.89
VPS28-213ENST00000530983 GPC3P51654 580 aa20.64■□□□□ 0.89
VPS28-213ENST00000530983 DLGAP5Q15398 846 aa20.64■□□□□ 0.89
VPS28-213ENST00000530983 CROCCP2Q86T23 111 aa20.64■□□□□ 0.89
VPS28-213ENST00000530983 TIPINQ9BVW5 301 aa20.64■□□□□ 0.89
VPS28-213ENST00000530983 TAOK3Q9H2K8 898 aa20.64■□□□□ 0.89
VPS28-213ENST00000530983 LRRC19Q9H756 370 aa20.64■□□□□ 0.89
VPS28-213ENST00000530983 TOPORSQ9NS56 1045 aaPredicted RBP20.64■□□□□ 0.89
VPS28-213ENST00000530983 CHUKO15111 745 aa20.63■□□□□ 0.89
VPS28-213ENST00000530983 CLDN3O15551 220 aa20.63■□□□□ 0.89
VPS28-213ENST00000530983 DLATP10515 647 aaKnown RBP20.63■□□□□ 0.89
VPS28-213ENST00000530983 AUHQ13825 339 aaKnown RBP20.63■□□□□ 0.89
VPS28-213ENST00000530983 ZNF568Q3ZCX4 644 aa20.63■□□□□ 0.89
VPS28-213ENST00000530983 SPDYE2Q495Y8 402 aa20.63■□□□□ 0.89
VPS28-213ENST00000530983 PLA2G4FQ68DD2 849 aa20.63■□□□□ 0.89
VPS28-213ENST00000530983 RSBN1LQ6PCB5 846 aaPredicted RBP20.63■□□□□ 0.89
VPS28-213ENST00000530983 C4orf19Q8IY42 314 aa20.63■□□□□ 0.89
VPS28-213ENST00000530983 TMEM161BQ8NDZ6 487 aa20.63■□□□□ 0.89
VPS28-213ENST00000530983 TAS1R2Q8TE23 839 aa20.63■□□□□ 0.89
VPS28-213ENST00000530983 DHX38Q92620 1227 aaKnown RBP20.63■□□□□ 0.89
VPS28-213ENST00000530983 P3H4Q92791 437 aa20.63■□□□□ 0.89
VPS28-213ENST00000530983 ELMO3Q96BJ8 720 aa20.63■□□□□ 0.89
VPS28-213ENST00000530983 TACO1Q9BSH4 297 aaKnown RBP20.63■□□□□ 0.89
VPS28-213ENST00000530983 KIFC3Q9BVG8 833 aa20.63■□□□□ 0.89
VPS28-213ENST00000530983 MTFR1LQ9H019 292 aa20.63■□□□□ 0.89
VPS28-213ENST00000530983 TBX20Q9UMR3 447 aa20.63■□□□□ 0.89
VPS28-213ENST00000530983 RASGRF2O14827 1237 aa20.62■□□□□ 0.89
VPS28-213ENST00000530983 TBC1D12O60347 775 aa20.62■□□□□ 0.89
VPS28-213ENST00000530983 ECEL1O95672 775 aa20.62■□□□□ 0.89
VPS28-213ENST00000530983 LLGL1Q15334 1064 aa20.62■□□□□ 0.89
VPS28-213ENST00000530983 FAM102BQ5T8I3 360 aa20.62■□□□□ 0.89
VPS28-213ENST00000530983 KDM4CQ9H3R0 1056 aa20.62■□□□□ 0.89
VPS28-213ENST00000530983 VEZTQ9HBM0 779 aa20.62■□□□□ 0.89
VPS28-213ENST00000530983 TMEM8AQ9HCN3 771 aa20.62■□□□□ 0.89
VPS28-213ENST00000530983 INTS9Q9NV88 658 aaKnown RBP20.62■□□□□ 0.89
VPS28-213ENST00000530983 RGPD3A6NKT7 1758 aaPredicted RBP20.62■□□□□ 0.89
VPS28-213ENST00000530983 RGPD4Q7Z3J3 1758 aa20.62■□□□□ 0.89
VPS28-213ENST00000530983 CNGA1P29973 690 aa20.62■□□□□ 0.89
VPS28-213ENST00000530983 GHRHRQ02643 423 aa20.62■□□□□ 0.89
VPS28-213ENST00000530983 MKRN4PQ13434 485 aaPredicted RBP20.62■□□□□ 0.89
VPS28-213ENST00000530983 MAP4K3Q8IVH8 894 aa20.62■□□□□ 0.89
VPS28-213ENST00000530983 SUPT20HQ8NEM7 779 aa20.62■□□□□ 0.89
VPS28-213ENST00000530983 SLCO2A1Q92959 643 aa20.62■□□□□ 0.89
VPS28-213ENST00000530983 PRMT1Q99873 361 aaKnown RBP20.62■□□□□ 0.89
VPS28-213ENST00000530983 CCDC134Q9H6E4 229 aa20.62■□□□□ 0.89
VPS28-213ENST00000530983 TBC1D22BQ9NU19 505 aa20.62■□□□□ 0.89
VPS28-213ENST00000530983 FSCN2O14926 492 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 ASAP2O43150 1006 aa20.61■□□□□ 0.89
VPS28-213ENST00000530983 ACAD10Q6JQN1 1059 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms