RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 POMGNT1Q8WZA1 660 aa15.3■□□□□ 0.04
USF1-209ENST00000529476 ZNF689Q96CS4 500 aaPredicted RBP15.3■□□□□ 0.04
USF1-209ENST00000529476 YME1L1Q96TA2 773 aa15.3■□□□□ 0.04
USF1-209ENST00000529476 CBWD1Q9BRT8 395 aa15.3■□□□□ 0.04
USF1-209ENST00000529476 MSTO1Q9BUK6 570 aa15.3■□□□□ 0.04
USF1-209ENST00000529476 RC3H2Q9HBD1 1191 aaKnown RBP15.3■□□□□ 0.04
USF1-209ENST00000529476 TMEM63CQ9P1W3 806 aa15.3■□□□□ 0.04
USF1-209ENST00000529476 PARP2Q9UGN5 583 aa15.3■□□□□ 0.04
USF1-209ENST00000529476 CITO14578 2027 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 LCHNA4D1U4 455 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 TBKBP1A7MCY6 615 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 CLIC2O15247 247 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 HOXA2O43364 376 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 FAM189A1O60320 539 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 OFD1O75665 1012 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 RECQL4O94761 1208 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 GRM5P41594 1212 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 AFF1P51825 1210 aaKnown RBP15.29■□□□□ 0.04
USF1-209ENST00000529476 PAN2Q504Q3 1202 aaKnown RBP15.29■□□□□ 0.04
USF1-209ENST00000529476 CCDC183Q5T5S1 534 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 ARMCX5Q6P1M9 558 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 ZSWIM2Q8NEG5 633 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 ADAMTS19Q8TE59 1207 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 CASD1Q96PB1 797 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 ASB2Q96Q27 587 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 RAD9AQ99638 391 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 CCDC94Q9BW85 323 aaPredicted RBP15.29■□□□□ 0.04
USF1-209ENST00000529476 PBX4Q9BYU1 374 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 KCTD10Q9H3F6 313 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 PCIF1Q9H4Z3 704 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 RSAD1Q9HA92 442 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 AGPAT3Q9NRZ7 376 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 KLK14Q9P0G3 267 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 INPP5FQ9Y2H2 1132 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 YBX2Q9Y2T7 364 aaKnown RBP15.29■□□□□ 0.04
USF1-209ENST00000529476 INSL6Q9Y581 213 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 PCDHA11Q9Y5I1 949 aa15.29■□□□□ 0.04
USF1-209ENST00000529476 TDRD15B5MCY1 1934 aaKnown RBP15.28■□□□□ 0.04
USF1-209ENST00000529476 OGTO15294 1046 aa15.28■□□□□ 0.04
USF1-209ENST00000529476 KIF20AO95235 890 aa15.28■□□□□ 0.04
USF1-209ENST00000529476 CD44P16070 742 aaKnown RBP15.28■□□□□ 0.04
USF1-209ENST00000529476 GARTP22102 1010 aa15.28■□□□□ 0.04
USF1-209ENST00000529476 MLH1P40692 756 aa15.28■□□□□ 0.04
USF1-209ENST00000529476 TNFSF9P41273 254 aa15.28■□□□□ 0.04
USF1-209ENST00000529476 NFKBIBQ15653 356 aa15.28■□□□□ 0.04
USF1-209ENST00000529476 KLHL40Q2TBA0 621 aa15.28■□□□□ 0.04
USF1-209ENST00000529476 COBLL1Q53SF7 1204 aa15.28■□□□□ 0.04
USF1-209ENST00000529476 CAVIN1Q6NZI2 390 aaKnown RBP15.28■□□□□ 0.04
USF1-209ENST00000529476 GLB1LQ6UWU2 654 aa15.28■□□□□ 0.04
USF1-209ENST00000529476 RBM43Q6ZSC3 357 aaKnown RBP15.28■□□□□ 0.04
USF1-209ENST00000529476 HS2ST1Q7LGA3 356 aa15.28■□□□□ 0.04
USF1-209ENST00000529476 ABI1Q8IZP0 508 aa15.28■□□□□ 0.04
USF1-209ENST00000529476 ADSSL1Q8N142 457 aa15.28■□□□□ 0.04
USF1-209ENST00000529476 TRIML1Q8N9V2 468 aa15.28■□□□□ 0.04
USF1-209ENST00000529476 ATXN2LQ8WWM7 1075 aaKnown RBP15.28■□□□□ 0.04
USF1-209ENST00000529476 SAAL1Q96ER3 474 aa15.28■□□□□ 0.04
USF1-209ENST00000529476 ZFP42Q96MM3 310 aa15.28■□□□□ 0.04
USF1-209ENST00000529476 GAD1Q99259 594 aa15.28■□□□□ 0.04
USF1-209ENST00000529476 GTPBP4Q9BZE4 634 aaKnown RBP15.28■□□□□ 0.04
USF1-209ENST00000529476 TMEM117Q9H0C3 514 aa15.28■□□□□ 0.04
USF1-209ENST00000529476 CXCL16Q9H2A7 254 aa15.28■□□□□ 0.04
USF1-209ENST00000529476 ZNF576Q9H609 170 aa15.28■□□□□ 0.04
USF1-209ENST00000529476 TYW1Q9NV66 732 aaKnown RBP15.28■□□□□ 0.04
USF1-209ENST00000529476 AGO2Q9UKV8 859 aaKnown RBP15.28■□□□□ 0.04
USF1-209ENST00000529476 GIT1Q9Y2X7 761 aa15.28■□□□□ 0.04
USF1-209ENST00000529476 KIAA1671Q9BY89 1806 aa15.28■□□□□ 0.04
USF1-209ENST00000529476 GOLGA8IPA6NC78 632 aa15.27■□□□□ 0.04
USF1-209ENST00000529476 ARL5CA6NH57 179 aa15.27■□□□□ 0.04
USF1-209ENST00000529476 GOLGA8JA6NMD2 632 aa15.27■□□□□ 0.04
USF1-209ENST00000529476 MEFVO15553 781 aaPredicted RBP15.27■□□□□ 0.04
USF1-209ENST00000529476 ARHGEF15O94989 841 aa15.27■□□□□ 0.04
USF1-209ENST00000529476 CA3P07451 260 aa15.27■□□□□ 0.04
USF1-209ENST00000529476 DNAJB2P25686 324 aa15.27■□□□□ 0.04
USF1-209ENST00000529476 ACOT2P49753 483 aa15.27■□□□□ 0.04
USF1-209ENST00000529476 SNRPFP62306 86 aaKnown RBP15.27■□□□□ 0.04
USF1-209ENST00000529476 BTG3Q14201 252 aaPredicted RBP15.27■□□□□ 0.04
USF1-209ENST00000529476 RAB30Q15771 203 aa15.27■□□□□ 0.04
USF1-209ENST00000529476 NOMO2Q5JPE7 1267 aa15.27■□□□□ 0.04
USF1-209ENST00000529476 CMTR2Q8IYT2 770 aaKnown RBP15.27■□□□□ 0.04
USF1-209ENST00000529476 SP7Q8TDD2 431 aaPredicted RBP15.27■□□□□ 0.04
USF1-209ENST00000529476 NOC3LQ8WTT2 800 aaKnown RBP15.27■□□□□ 0.04
USF1-209ENST00000529476 ACAP3Q96P50 834 aa15.27■□□□□ 0.04
USF1-209ENST00000529476 UHRF1Q96T88 793 aaPredicted RBP15.27■□□□□ 0.04
USF1-209ENST00000529476 NKX2-4Q9H2Z4 354 aa15.27■□□□□ 0.04
USF1-209ENST00000529476 UBN1Q9NPG3 1134 aa15.27■□□□□ 0.04
USF1-209ENST00000529476 MIOSQ9NXC5 875 aa15.27■□□□□ 0.04
USF1-209ENST00000529476 HSPBP1Q9NZL4 362 aa15.27■□□□□ 0.04
USF1-209ENST00000529476 HCSTQ9UBK5 93 aa15.27■□□□□ 0.04
USF1-209ENST00000529476 MSRAQ9UJ68 235 aa15.27■□□□□ 0.04
USF1-209ENST00000529476 ANK1P16157 1881 aa15.27■□□□□ 0.03
USF1-209ENST00000529476 PDCD11Q14690 1871 aaKnown RBP15.27■□□□□ 0.03
USF1-209ENST00000529476 RALGAPA2Q2PPJ7 1873 aa15.27■□□□□ 0.03
USF1-209ENST00000529476 PPP1R3GB7ZBB8 358 aa15.26■□□□□ 0.03
USF1-209ENST00000529476 PDXKO00764 312 aa15.26■□□□□ 0.03
USF1-209ENST00000529476 CLTAP09496 248 aa15.26■□□□□ 0.03
USF1-209ENST00000529476 CXCL8P10145 99 aa15.26■□□□□ 0.03
USF1-209ENST00000529476 SCNN1GP51170 649 aa15.26■□□□□ 0.03
USF1-209ENST00000529476 CYP2J2P51589 502 aa15.26■□□□□ 0.03
USF1-209ENST00000529476 YARSP54577 528 aaKnown RBP15.26■□□□□ 0.03
USF1-209ENST00000529476 ENOX2Q16206 610 aaKnown RBP15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms