RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 MBLAC1A4D2B0 266 aaPredicted RBP8.15□□□□□ -1.1
CD44-228ENST00000528455 TMEM150BA6NC51 233 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 MYADML2A6NDP7 307 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 H0YCG3 227 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 HIP1RO75146 1068 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 FAM13AO94988 1023 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 KIF20AO95235 890 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 ZNF286BP0CG31 522 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 SMIM10L2AP0DMW4 78 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 SMIM10L2BP0DMW5 78 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 PLS3P13797 630 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 IDEP14735 1019 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 SYN1P17600 705 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 CASP1P29466 404 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 CDK7P50613 346 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 PPFIA1Q13136 1202 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 MAPK7Q13164 816 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 PPP2R5AQ15172 486 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 GRIK4Q16099 956 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 SAMD5Q5TGI4 173 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 PLA2G4FQ68DD2 849 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 SLC39A5Q6ZMH5 540 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 STXBP4Q6ZWJ1 553 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 SV2AQ7L0J3 742 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 ZNF720Q7Z2F6 126 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 RPAINQ86UA6 219 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 DAW1Q8N136 415 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 MYCT1Q8N699 235 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 GPR161Q8N6U8 529 aaKnown RBP8.15□□□□□ -1.1
CD44-228ENST00000528455 SLC43A3Q8NBI5 491 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 ZNF507Q8TCN5 953 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 PRPF31Q8WWY3 499 aaKnown RBP8.15□□□□□ -1.1
CD44-228ENST00000528455 ERCC4Q92889 916 aaPredicted RBP8.15□□□□□ -1.1
CD44-228ENST00000528455 GTPBP3Q969Y2 492 aaKnown RBP8.15□□□□□ -1.1
CD44-228ENST00000528455 IFT74Q96LB3 600 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 GDF15Q99988 308 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 SH2D3AQ9BRG2 576 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 FUCA2Q9BTY2 467 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 NAT10Q9H0A0 1025 aaKnown RBP8.15□□□□□ -1.1
CD44-228ENST00000528455 GZF1Q9H116 711 aaPredicted RBP8.15□□□□□ -1.1
CD44-228ENST00000528455 SUGCTQ9HAC7 445 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 XPNPEP1Q9NQW7 623 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 EXOC1Q9NV70 894 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 NDFIP2Q9NV92 336 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 SETD4Q9NVD3 440 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 HDAC6Q9UBN7 1215 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 PRKAG2Q9UGJ0 569 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 GTF2IRD1Q9UHL9 959 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 MAN1B1Q9UKM7 699 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 PHF24Q9UPV7 400 aa8.15□□□□□ -1.1
CD44-228ENST00000528455 DNMT3AQ9Y6K1 912 aaPredicted RBP8.15□□□□□ -1.1
CD44-228ENST00000528455 GRIN2DO15399 1336 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 C17orf102A2RUQ5 167 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 USO1O60763 962 aaKnown RBP8.14□□□□□ -1.11
CD44-228ENST00000528455 TBCAO75347 108 aaKnown RBP8.14□□□□□ -1.11
CD44-228ENST00000528455 BMP6P22004 513 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 ERCC5P28715 1186 aaPredicted RBP8.14□□□□□ -1.11
CD44-228ENST00000528455 MAGEA10P43363 369 aaPredicted RBP8.14□□□□□ -1.11
CD44-228ENST00000528455 NAMPTP43490 491 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 SERPINB4P48594 390 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 GTF2BQ00403 316 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 TYRO3Q06418 890 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 RAD51AP2Q09MP3 1159 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 STK4Q13043 487 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 COASYQ13057 564 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 ITGA7Q13683 1181 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 ALCAMQ13740 583 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 EMC2Q15006 297 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 HIF1AQ16665 826 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 FAM26DQ5JW98 314 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 ODR4Q5SWX8 454 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 FAM102BQ5T8I3 360 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 LCE2CQ5TA81 110 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 ISM2Q6H9L7 571 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 FOXR2Q6PJQ5 311 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 FAM43BQ6ZT52 329 aaPredicted RBP8.14□□□□□ -1.11
CD44-228ENST00000528455 KIAA0319LQ8IZA0 1049 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 GUF1Q8N442 669 aaKnown RBP8.14□□□□□ -1.11
CD44-228ENST00000528455 LINC01465Q8N7H1 131 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 HELQQ8TDG4 1101 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 PSPC1Q8WXF1 523 aaKnown RBP8.14□□□□□ -1.11
CD44-228ENST00000528455 IFT43Q96FT9 208 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 DHTKD1Q96HY7 919 aaPredicted RBP8.14□□□□□ -1.11
CD44-228ENST00000528455 STRA6Q9BX79 667 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 NFKBIZQ9BYH8 718 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 UBE2OQ9C0C9 1292 aaKnown RBP8.14□□□□□ -1.11
CD44-228ENST00000528455 ZHX3Q9H4I2 956 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 MRPL44Q9H9J2 332 aaKnown RBP8.14□□□□□ -1.11
CD44-228ENST00000528455 NEUROD4Q9HD90 331 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 SUCLA2Q9P2R7 463 aaPredicted RBP8.14□□□□□ -1.11
CD44-228ENST00000528455 DMGDHQ9UI17 866 aaKnown RBP8.14□□□□□ -1.11
CD44-228ENST00000528455 ATP11BQ9Y2G3 1177 aa8.14□□□□□ -1.11
CD44-228ENST00000528455 PHLPP2Q6ZVD8 1323 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 A0A1W2PQ45 241 aaPredicted RBP8.13□□□□□ -1.11
CD44-228ENST00000528455 A0A1W2PQY0 241 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 RSPH10B2B2RC85 870 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 TGFBR3LH3BV60 316 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 K7ERI5 159 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 ARVCFO00192 962 aa8.13□□□□□ -1.11
CD44-228ENST00000528455 BIN1O00499 593 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms