RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 MTFR1LQ9H019 292 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 KATNBL1Q9H079 304 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 KLHL25Q9H0H3 589 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 CCDC8Q9H0W5 538 aaPredicted RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC6A15Q9H2J7 730 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 UNC45AQ9H3U1 944 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 RETREG1Q9H6L5 497 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 NRDE2Q9H7Z3 1164 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM204AQ9H8W3 233 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 C14orf93Q9H972 538 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 AGO3Q9H9G7 860 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 XPO5Q9HAV4 1204 aaKnown RBP eCLIP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 KCNK12Q9HB15 430 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 KIAA1586Q9HCI6 787 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TRIM39Q9HCM9 518 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 ARFGAP3Q9NP61 516 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 INCENPQ9NQS7 918 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 ACSS2Q9NR19 701 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 ARHGEF4Q9NR80 690 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC2A4RGQ9NR83 387 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TLR9Q9NR96 1032 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 C1orf112Q9NSG2 853 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TRMT13Q9NUP7 481 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM86C1Q9NVL1 165 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 RIC8BQ9NVN3 520 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TBCCD1Q9NVR7 557 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 GALNT8Q9NY28 637 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 PLA2G3Q9NZ20 509 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 C9orf78Q9NZ63 289 aaPredicted RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 PPP4R1LQ9P1A2 415 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 PI4KBQ9UBF8 816 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TESQ9UGI8 421 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SAP30BPQ9UHR5 308 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 EVLQ9UI08 416 aaPredicted RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZFP69BQ9UJL9 534 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 GJD2Q9UKL4 321 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TRHDEQ9UKU6 1024 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 MAFFQ9ULX9 164 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 PHTF1Q9UMS5 762 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 FZD1Q9UP38 647 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 APOBEC2Q9Y235 224 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZKSCAN5Q9Y2L8 839 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 LRCH1Q9Y2L9 728 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC45A1Q9Y2W3 748 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 POLR3KQ9Y2Y1 108 aaPredicted RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TMEM98Q9Y2Y6 226 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 NEU2Q9Y3R4 380 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZNF451Q9Y4E5 1061 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TTLL3Q9Y4R7 772 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 ASB1Q9Y576 335 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 TNPO3Q9Y5L0 923 aaKnown RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 MRFAP1Q9Y605 127 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 DGKBQ9Y6T7 804 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 MORC2Q9Y6X9 1032 aaPredicted RBP0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 U3KQE9 123 aa0.69□□□□□ -2.3
RNU4-54P-201ENST00000516428 SPATA31A6Q5VVP1 1343 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 LTBP3Q9NS15 1303 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 A0A1B0GTL3 188 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 LOC101059915A0A1B0GWI6 518 aaPredicted RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 A0A1W2PRQ8 180 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 TCRBV5S2A0A599 114 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 TCRBV16S1A1N1A0A5B0 115 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 SLC12A8A0AV02 714 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 KRTAP23-1A1A580 65 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 KLHL33A6NCF5 533 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 FAM83GA6ND36 823 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 TRIM75PA6NK02 468 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 ZNF839A8K0R7 811 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 NOTOA8MTQ0 251 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 B2RBV5 119 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 B5MCH6 92 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 F5H0A9 414 aaPredicted RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 H7C1D1 291 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 GCOM1H8Y6P7 765 aaPredicted RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 J3KRW8 73 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 FOXN3O00409 490 aaPredicted RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 NEMP1O14524 444 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 APAF1O14727 1248 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 AREL1O15033 823 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 FOXN1O15353 648 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 GPR42O15529 346 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 SGSM2O43147 1006 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 PRODHO43272 600 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 DHX16O60231 1041 aaKnown RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 B4GALT3O60512 393 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 PLOD3O60568 738 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 TLR5O60602 858 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 KPNA6O60684 536 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 SNX2O60749 519 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 GAS7O60861 476 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 NBNO60934 754 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 CLASP2O75122 1294 aaKnown RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 PHF2O75151 1096 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 PROP1O75360 226 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 MAFO75444 373 aaPredicted RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 OFD1O75665 1012 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 DNAJC8O75937 253 aaPredicted RBP0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 PRKD3O94806 890 aa0.68□□□□□ -2.3
RNU4-54P-201ENST00000516428 FKBP9O95302 570 aa0.68□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms