RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 C1orf228Q6PIY5 440 aa13.46□□□□□ -0.26
USP53-209ENST00000514665 HHIPL2Q6UWX4 724 aa13.46□□□□□ -0.26
USP53-209ENST00000514665 MDM1Q8TC05 714 aa13.46□□□□□ -0.26
USP53-209ENST00000514665 DDX27Q96GQ7 796 aaKnown RBP13.46□□□□□ -0.26
USP53-209ENST00000514665 FAM167AQ96KS9 214 aa13.46□□□□□ -0.26
USP53-209ENST00000514665 AGBL1Q96MI9 1066 aa13.46□□□□□ -0.26
USP53-209ENST00000514665 KIFC3Q9BVG8 833 aa13.46□□□□□ -0.26
USP53-209ENST00000514665 KLC4Q9NSK0 619 aa13.46□□□□□ -0.26
USP53-209ENST00000514665 HAUS5O94927 633 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 PDE1CQ14123 709 aaPredicted RBP13.45□□□□□ -0.26
USP53-209ENST00000514665 C3orf67Q6ZVT6 689 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 C4orf33Q8N1A6 199 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 ERP44Q9BS26 406 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 TUBB6Q9BUF5 446 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 RUSC1Q9BVN2 902 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 MRPL4Q9BYD3 311 aaKnown RBP13.45□□□□□ -0.26
USP53-209ENST00000514665 FBXO40Q9UH90 709 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 SCOCQ9UIL1 159 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 MSH4O15457 936 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 MAP3K7O43318 606 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 PHF2O75151 1096 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 HSPA4LO95757 839 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 IREB2P48200 963 aaKnown RBP13.45□□□□□ -0.26
USP53-209ENST00000514665 SLC29A2Q14542 456 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 RFX8Q6ZV50 586 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 ATP11CQ8NB49 1132 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 DAGLBQ8NCG7 672 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 SPDL1Q96EA4 605 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 LRGUKQ96M69 825 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 NUDCD1Q96RS6 583 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 VCPKMTQ9H867 229 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 VCX3AQ9NNX9 186 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 DEPDC5O75140 1603 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 FOXN3O00409 490 aaPredicted RBP13.45□□□□□ -0.26
USP53-209ENST00000514665 GGPS1O95749 300 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 NR3C2P08235 984 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 TMEM253P0C7T8 217 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 CASP2P42575 452 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 ARFIP2P53365 341 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 STX1BP61266 288 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 KLHL38Q2WGJ6 581 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 C2CD6Q53TS8 623 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 PRAMEF18Q5VWM3 479 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 DSTYKQ6XUX3 929 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 TRIM72Q6ZMU5 477 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 THAP2Q9H0W7 228 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 DHX35Q9H5Z1 703 aaKnown RBP13.45□□□□□ -0.26
USP53-209ENST00000514665 ECT2Q9H8V3 914 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 PARVAQ9NVD7 372 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 UVRAGQ9P2Y5 699 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 DIP2BQ9P265 1576 aa13.45□□□□□ -0.26
USP53-209ENST00000514665 SALL1Q9NSC2 1324 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 DGAT1O75907 488 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 PDHA1P08559 390 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 SMARCA1P28370 1054 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 CIITAP33076 1130 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 PHKA2P46019 1235 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 WDR93Q6P2C0 686 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.44□□□□□ -0.26
USP53-209ENST00000514665 ATP6V1E2Q96A05 226 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 TRIM4Q9C037 500 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 POLRMTO00411 1230 aaKnown RBP13.44□□□□□ -0.26
USP53-209ENST00000514665 CREB3O43889 395 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 KRT3P12035 628 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 HSPA9P38646 679 aaKnown RBP13.44□□□□□ -0.26
USP53-209ENST00000514665 ART3Q13508 389 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 HIF1AQ16665 826 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 P3H1Q32P28 736 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 LRRC43Q8N309 656 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 PIP4K2CQ8TBX8 421 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 XPO6Q96QU8 1125 aaKnown RBP13.44□□□□□ -0.26
USP53-209ENST00000514665 TRABDQ9H4I3 376 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 AGPAT3Q9NRZ7 376 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 IPO11Q9UI26 975 aaKnown RBP13.44□□□□□ -0.26
USP53-209ENST00000514665 CDH16O75309 829 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 SARSP49591 514 aaKnown RBP13.44□□□□□ -0.26
USP53-209ENST00000514665 STAT5BP51692 787 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 PARP9Q8IXQ6 854 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 FBXL16Q8N461 479 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 ACER1Q8TDN7 264 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 CASKIN2Q8WXE0 1202 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 EXT2Q93063 718 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 TRAIPQ9BWF2 469 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 ISCUQ9H1K1 167 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 KIF3CO14782 793 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 AGTP01019 485 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 VEGFAP15692 232 aaPredicted RBP13.44□□□□□ -0.26
USP53-209ENST00000514665 ANXA13P27216 316 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 HSD17B3P37058 310 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 METTL23Q86XA0 190 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 PDZD8Q8NEN9 1154 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 TPCN2Q8NHX9 752 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 OTUD5Q96G74 571 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 KLF6Q99612 283 aaPredicted RBP13.44□□□□□ -0.26
USP53-209ENST00000514665 OSBPL8Q9BZF1 889 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 TMEM39BQ9GZU3 492 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 KCNH7Q9NS40 1196 aa13.44□□□□□ -0.26
USP53-209ENST00000514665 LPXNO60711 386 aa13.43□□□□□ -0.26
USP53-209ENST00000514665 NOP14P78316 857 aaKnown RBP13.43□□□□□ -0.26
USP53-209ENST00000514665 ZNF772Q68DY9 489 aaPredicted RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms