RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 TNFSF9P41273 254 aa32.29■■■□□ 2.76
LIMCH1-211ENST00000509638 CENPPQ6IPU0 288 aa32.29■■■□□ 2.76
LIMCH1-211ENST00000509638 C12orf56Q8IXR9 622 aa32.29■■■□□ 2.76
LIMCH1-211ENST00000509638 ZSWIM2Q8NEG5 633 aa32.29■■■□□ 2.76
LIMCH1-211ENST00000509638 HELQQ8TDG4 1101 aa32.29■■■□□ 2.76
LIMCH1-211ENST00000509638 NOC3LQ8WTT2 800 aaKnown RBP32.29■■■□□ 2.76
LIMCH1-211ENST00000509638 P2RX5Q93086 422 aa32.29■■■□□ 2.76
LIMCH1-211ENST00000509638 DHTKD1Q96HY7 919 aaPredicted RBP32.29■■■□□ 2.76
LIMCH1-211ENST00000509638 ZBED2Q9BTP6 218 aa32.29■■■□□ 2.76
LIMCH1-211ENST00000509638 HOXA2O43364 376 aa32.28■■■□□ 2.76
LIMCH1-211ENST00000509638 DGKIO75912 1065 aa32.28■■■□□ 2.76
LIMCH1-211ENST00000509638 NR3C1P04150 777 aa32.28■■■□□ 2.76
LIMCH1-211ENST00000509638 MLH1P40692 756 aa32.28■■■□□ 2.76
LIMCH1-211ENST00000509638 ACOT2P49753 483 aa32.28■■■□□ 2.76
LIMCH1-211ENST00000509638 PMS1P54277 932 aaKnown RBP32.28■■■□□ 2.76
LIMCH1-211ENST00000509638 ABI1Q8IZP0 508 aa32.28■■■□□ 2.76
LIMCH1-211ENST00000509638 NELFBQ8WX92 580 aa32.28■■■□□ 2.76
LIMCH1-211ENST00000509638 YME1L1Q96TA2 773 aa32.28■■■□□ 2.76
LIMCH1-211ENST00000509638 FAM213AQ9BRX8 229 aa32.28■■■□□ 2.76
LIMCH1-211ENST00000509638 TRIM49BA6NDI0 452 aa32.28■■■□□ 2.76
LIMCH1-211ENST00000509638 GRXCR1A8MXD5 290 aa32.28■■■□□ 2.76
LIMCH1-211ENST00000509638 CLTAP09496 248 aa32.28■■■□□ 2.76
LIMCH1-211ENST00000509638 PAK1Q13153 545 aa32.28■■■□□ 2.76
LIMCH1-211ENST00000509638 KYAT1Q16773 422 aa32.28■■■□□ 2.76
LIMCH1-211ENST00000509638 GLB1LQ6UWU2 654 aa32.28■■■□□ 2.76
LIMCH1-211ENST00000509638 ACAP3Q96P50 834 aa32.28■■■□□ 2.76
LIMCH1-211ENST00000509638 TSG101Q99816 390 aa32.28■■■□□ 2.76
LIMCH1-211ENST00000509638 RC3H2Q9HBD1 1191 aaKnown RBP32.28■■■□□ 2.76
LIMCH1-211ENST00000509638 UBN1Q9NPG3 1134 aa32.28■■■□□ 2.76
LIMCH1-211ENST00000509638 KLK14Q9P0G3 267 aa32.28■■■□□ 2.76
LIMCH1-211ENST00000509638 GIT1Q9Y2X7 761 aa32.28■■■□□ 2.76
LIMCH1-211ENST00000509638 CHD9Q3L8U1 2897 aa32.27■■■□□ 2.76
LIMCH1-211ENST00000509638 SYCE3A1L190 88 aa32.27■■■□□ 2.76
LIMCH1-211ENST00000509638 GOLGA8IPA6NC78 632 aa32.27■■■□□ 2.76
LIMCH1-211ENST00000509638 GOLGA8JA6NMD2 632 aa32.27■■■□□ 2.76
LIMCH1-211ENST00000509638 KIAA0391O15091 583 aaKnown RBP32.27■■■□□ 2.76
LIMCH1-211ENST00000509638 CXCL8P10145 99 aa32.27■■■□□ 2.76
LIMCH1-211ENST00000509638 CCNE1P24864 410 aa32.27■■■□□ 2.76
LIMCH1-211ENST00000509638 YARSP54577 528 aaKnown RBP32.27■■■□□ 2.76
LIMCH1-211ENST00000509638 STX1AQ16623 288 aa32.27■■■□□ 2.76
LIMCH1-211ENST00000509638 GPD1LQ8N335 351 aa32.27■■■□□ 2.76
LIMCH1-211ENST00000509638 ZFP42Q96MM3 310 aa32.27■■■□□ 2.76
LIMCH1-211ENST00000509638 TOPORSQ9NS56 1045 aaPredicted RBP32.27■■■□□ 2.76
LIMCH1-211ENST00000509638 CPSF3Q9UKF6 684 aaKnown RBP32.27■■■□□ 2.76
LIMCH1-211ENST00000509638 INPP5FQ9Y2H2 1132 aa32.27■■■□□ 2.76
LIMCH1-211ENST00000509638 TLL1O43897 1013 aa32.26■■■□□ 2.75
LIMCH1-211ENST00000509638 EXTL3O43909 919 aa32.26■■■□□ 2.75
LIMCH1-211ENST00000509638 LETM1O95202 739 aaPredicted RBP32.26■■■□□ 2.75
LIMCH1-211ENST00000509638 RABGGTBP53611 331 aa32.26■■■□□ 2.75
LIMCH1-211ENST00000509638 LRRC63Q05C16 580 aa32.26■■■□□ 2.75
LIMCH1-211ENST00000509638 XXYLT1Q8NBI6 393 aa32.26■■■□□ 2.75
LIMCH1-211ENST00000509638 GAD1Q99259 594 aa32.26■■■□□ 2.75
LIMCH1-211ENST00000509638 DACH1Q9UI36 760 aa32.26■■■□□ 2.75
LIMCH1-211ENST00000509638 KIAA1671Q9BY89 1806 aa32.25■■■□□ 2.75
LIMCH1-211ENST00000509638 A0A1W2PPC1 479 aa32.25■■■□□ 2.75
LIMCH1-211ENST00000509638 ARL5CA6NH57 179 aa32.25■■■□□ 2.75
LIMCH1-211ENST00000509638 LDHAP00338 332 aaKnown RBP32.25■■■□□ 2.75
LIMCH1-211ENST00000509638 NR2F2P24468 414 aa32.25■■■□□ 2.75
LIMCH1-211ENST00000509638 HTRA4P83105 476 aaPredicted RBP32.25■■■□□ 2.75
LIMCH1-211ENST00000509638 TYRO3Q06418 890 aa32.25■■■□□ 2.75
LIMCH1-211ENST00000509638 ENOX2Q16206 610 aaKnown RBP32.25■■■□□ 2.75
LIMCH1-211ENST00000509638 EDRF1Q3B7T1 1238 aa32.25■■■□□ 2.75
LIMCH1-211ENST00000509638 ZSCAN23Q3MJ62 389 aa32.25■■■□□ 2.75
LIMCH1-211ENST00000509638 PAN2Q504Q3 1202 aaKnown RBP32.25■■■□□ 2.75
LIMCH1-211ENST00000509638 ANKRD40Q6AI12 368 aa32.25■■■□□ 2.75
LIMCH1-211ENST00000509638 CRELD2Q6UXH1 353 aaPredicted RBP32.25■■■□□ 2.75
LIMCH1-211ENST00000509638 SNX27Q96L92 541 aa32.25■■■□□ 2.75
LIMCH1-211ENST00000509638 TMEM117Q9H0C3 514 aa32.25■■■□□ 2.75
LIMCH1-211ENST00000509638 TBKBP1A7MCY6 615 aa32.24■■■□□ 2.75
LIMCH1-211ENST00000509638 MEFVO15553 781 aaPredicted RBP32.24■■■□□ 2.75
LIMCH1-211ENST00000509638 OFD1O75665 1012 aa32.24■■■□□ 2.75
LIMCH1-211ENST00000509638 AFF1P51825 1210 aaKnown RBP32.24■■■□□ 2.75
LIMCH1-211ENST00000509638 STX17P56962 302 aa32.24■■■□□ 2.75
LIMCH1-211ENST00000509638 SLC9A9Q8IVB4 645 aa32.24■■■□□ 2.75
LIMCH1-211ENST00000509638 TMEM174Q8WUU8 243 aa32.24■■■□□ 2.75
LIMCH1-211ENST00000509638 ZNF689Q96CS4 500 aaPredicted RBP32.24■■■□□ 2.75
LIMCH1-211ENST00000509638 RPS6KC1Q96S38 1066 aa32.24■■■□□ 2.75
LIMCH1-211ENST00000509638 ANO10Q9NW15 660 aa32.24■■■□□ 2.75
LIMCH1-211ENST00000509638 EXOC3O60645 756 aa32.24■■■□□ 2.75
LIMCH1-211ENST00000509638 NFIL3Q16649 462 aa32.24■■■□□ 2.75
LIMCH1-211ENST00000509638 CASD1Q96PB1 797 aa32.24■■■□□ 2.75
LIMCH1-211ENST00000509638 RAD9AQ99638 391 aa32.24■■■□□ 2.75
LIMCH1-211ENST00000509638 CXCL16Q9H2A7 254 aa32.24■■■□□ 2.75
LIMCH1-211ENST00000509638 RPF1Q9H9Y2 349 aaKnown RBP32.24■■■□□ 2.75
LIMCH1-211ENST00000509638 DMAC2Q9NW81 257 aa32.24■■■□□ 2.75
LIMCH1-211ENST00000509638 INSL6Q9Y581 213 aa32.24■■■□□ 2.75
LIMCH1-211ENST00000509638 BICDL2A1A5D9 508 aa32.23■■■□□ 2.75
LIMCH1-211ENST00000509638 TTI2Q6NXR4 508 aa32.23■■■□□ 2.75
LIMCH1-211ENST00000509638 CBWD2Q8IUF1 395 aa32.23■■■□□ 2.75
LIMCH1-211ENST00000509638 RBAKQ9NYW8 714 aaPredicted RBP32.23■■■□□ 2.75
LIMCH1-211ENST00000509638 CHD7Q9P2D1 2997 aa32.22■■■□□ 2.75
LIMCH1-211ENST00000509638 HSFX4A0A1B0GTS1 333 aaPredicted RBP32.22■■■□□ 2.75
LIMCH1-211ENST00000509638 HSFX3A0A1B0GWH4 333 aaPredicted RBP32.22■■■□□ 2.75
LIMCH1-211ENST00000509638 SCNN1GP51170 649 aa32.22■■■□□ 2.75
LIMCH1-211ENST00000509638 SNRNP35Q16560 246 aaKnown RBP32.22■■■□□ 2.75
LIMCH1-211ENST00000509638 SLC10A6Q3KNW5 377 aa32.22■■■□□ 2.75
LIMCH1-211ENST00000509638 NOMO2Q5JPE7 1267 aa32.22■■■□□ 2.75
LIMCH1-211ENST00000509638 URGCPQ8TCY9 931 aa32.22■■■□□ 2.75
LIMCH1-211ENST00000509638 EEF2KMTQ96G04 330 aa32.22■■■□□ 2.75
LIMCH1-211ENST00000509638 FBXL18Q96ME1 805 aa32.22■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms