RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ATXN7L2Q5T6C5 722 aaPredicted RBP4.23□□□□□ -1.73
NUP54-208ENST00000508604 FRMD7Q6ZUT3 714 aa4.23□□□□□ -1.73
NUP54-208ENST00000508604 ZNF610Q8N9Z0 462 aa4.23□□□□□ -1.73
NUP54-208ENST00000508604 OR14C36Q8NHC7 312 aa4.23□□□□□ -1.73
NUP54-208ENST00000508604 HEPHQ9BQS7 1158 aa4.23□□□□□ -1.73
NUP54-208ENST00000508604 SLC29A3Q9BZD2 475 aa4.23□□□□□ -1.73
NUP54-208ENST00000508604 CASS4Q9NQ75 786 aa4.23□□□□□ -1.73
NUP54-208ENST00000508604 GPRC5DQ9NZD1 345 aa4.23□□□□□ -1.73
NUP54-208ENST00000508604 PRSS50Q9UI38 385 aa4.23□□□□□ -1.73
NUP54-208ENST00000508604 DRGXA6NNA5 263 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 FLT3LGP49771 235 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 PABPC4Q13310 644 aaKnown RBP eCLIP4.22□□□□□ -1.73
NUP54-208ENST00000508604 ZNF169Q14929 603 aaPredicted RBP4.22□□□□□ -1.73
NUP54-208ENST00000508604 SF3A1Q15459 793 aaKnown RBP4.22□□□□□ -1.73
NUP54-208ENST00000508604 Q6ZNX1 250 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 C11orf74Q86VG3 221 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 MAPKAPK5Q8IW41 473 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 SYNPOQ8N3V7 929 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 Q96MF0 132 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 ALOXE3Q9BYJ1 711 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 OSBPL2Q9H1P3 480 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 DMTF1Q9Y222 760 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 MARCH11A6NNE9 402 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 PROB1E7EW31 1015 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 PPP1R12AO14974 1030 aaPredicted RBP4.22□□□□□ -1.73
NUP54-208ENST00000508604 PJA2O43164 708 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 SNRPA1P09661 255 aaKnown RBP4.22□□□□□ -1.73
NUP54-208ENST00000508604 CRHR1P34998 444 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 SCNN1BP51168 640 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 CHN2P52757 468 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 CLRN1P58418 232 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 PHC1P78364 1004 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 DSG1Q02413 1049 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 NHLH1Q02575 133 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 AGAP9Q5VTM2 703 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 RHOT2Q8IXI1 618 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 OR56A1Q8NGH5 318 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 ZNF480Q8WV37 535 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 MRFAP1L1Q96HT8 127 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 ANO3Q9BYT9 981 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.22□□□□□ -1.73
NUP54-208ENST00000508604 SEMA4GQ9NTN9 838 aa4.22□□□□□ -1.73
NUP54-208ENST00000508604 EVLQ9UI08 416 aaPredicted RBP4.22□□□□□ -1.73
NUP54-208ENST00000508604 ZNF891A8MT65 544 aaPredicted RBP4.21□□□□□ -1.74
NUP54-208ENST00000508604 PHF2O75151 1096 aa4.21□□□□□ -1.74
NUP54-208ENST00000508604 ASMTLO95671 621 aa4.21□□□□□ -1.74
NUP54-208ENST00000508604 ABCG1P45844 678 aa4.21□□□□□ -1.74
NUP54-208ENST00000508604 RARRES1P49788 294 aa4.21□□□□□ -1.74
NUP54-208ENST00000508604 CACNA2D1P54289 1103 aa4.21□□□□□ -1.74
NUP54-208ENST00000508604 SIM1P81133 766 aaPredicted RBP4.21□□□□□ -1.74
NUP54-208ENST00000508604 MRPS35P82673 323 aaKnown RBP4.21□□□□□ -1.74
NUP54-208ENST00000508604 TSHZ3Q63HK5 1081 aa4.21□□□□□ -1.74
NUP54-208ENST00000508604 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.21□□□□□ -1.74
NUP54-208ENST00000508604 ABHD15Q6UXT9 468 aa4.21□□□□□ -1.74
NUP54-208ENST00000508604 GPR149Q86SP6 731 aa4.21□□□□□ -1.74
NUP54-208ENST00000508604 SRRM1Q8IYB3 904 aaKnown RBP4.21□□□□□ -1.74
NUP54-208ENST00000508604 TMEM132CQ8N3T6 1108 aa4.21□□□□□ -1.74
NUP54-208ENST00000508604 RNF31Q96EP0 1072 aa4.21□□□□□ -1.74
NUP54-208ENST00000508604 GPR101Q96P66 508 aaPredicted RBP4.21□□□□□ -1.74
NUP54-208ENST00000508604 SLC17A6Q9P2U8 582 aa4.21□□□□□ -1.74
NUP54-208ENST00000508604 RNF7Q9UBF6 113 aa4.21□□□□□ -1.74
NUP54-208ENST00000508604 CDK11AQ9UQ88 783 aaPredicted RBP4.21□□□□□ -1.74
NUP54-208ENST00000508604 TGM5O43548 720 aa4.2□□□□□ -1.74
NUP54-208ENST00000508604 PTPN7P35236 360 aa4.2□□□□□ -1.74
NUP54-208ENST00000508604 SQSTM1Q13501 440 aa4.2□□□□□ -1.74
NUP54-208ENST00000508604 FAM47AQ5JRC9 791 aa4.2□□□□□ -1.74
NUP54-208ENST00000508604 PRAMEF14Q5SWL7 426 aa4.2□□□□□ -1.74
NUP54-208ENST00000508604 FOXR2Q6PJQ5 311 aa4.2□□□□□ -1.74
NUP54-208ENST00000508604 FAM43AQ8N2R8 423 aa4.2□□□□□ -1.74
NUP54-208ENST00000508604 CEP95Q96GE4 821 aa4.2□□□□□ -1.74
NUP54-208ENST00000508604 RNPEPQ9H4A4 650 aa4.2□□□□□ -1.74
NUP54-208ENST00000508604 GALNT9Q9HCQ5 603 aa4.2□□□□□ -1.74
NUP54-208ENST00000508604 KMT5AQ9NQR1 393 aa4.2□□□□□ -1.74
NUP54-208ENST00000508604 PPP2R3BQ9Y5P8 575 aa4.2□□□□□ -1.74
NUP54-208ENST00000508604 ORC4O43929 436 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 PROP1O75360 226 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 RBMXL2O75526 392 aaKnown RBP4.19□□□□□ -1.74
NUP54-208ENST00000508604 CTSSP25774 331 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 CTGFP29279 349 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 MANFP55145 182 aaKnown RBP4.19□□□□□ -1.74
NUP54-208ENST00000508604 FOXF2Q12947 444 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 RRP12Q5JTH9 1297 aaKnown RBP4.19□□□□□ -1.74
NUP54-208ENST00000508604 AKNAD1Q5T1N1 836 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 METRNLQ641Q3 311 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 FAM180AQ6UWF9 173 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 MED25Q71SY5 747 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 ACTRT2Q8TDY3 377 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 SH3TC2Q8TF17 1288 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 FUBP3Q96I24 572 aaKnown RBP eCLIP4.19□□□□□ -1.74
NUP54-208ENST00000508604 BOD1Q96IK1 185 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 CDY2AQ9Y6F7 541 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 RPTORQ8N122 1335 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 KDM1AO60341 852 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 MATN4O95460 622 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 IL2P60568 153 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 RAP2BP61225 183 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 TERF2Q15554 542 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 TCEA2Q15560 299 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 MFSD14BQ5SR56 506 aa4.19□□□□□ -1.74
NUP54-208ENST00000508604 GJC2Q5T442 439 aaPredicted RBP4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms