RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 CALB2P22676 271 aa11.82□□□□□ -0.52
LIMCH1-208ENST00000508501 AKAP5P24588 427 aa11.82□□□□□ -0.52
LIMCH1-208ENST00000508501 CACNA2D1P54289 1103 aa11.82□□□□□ -0.52
LIMCH1-208ENST00000508501 RAB25P57735 213 aa11.82□□□□□ -0.52
LIMCH1-208ENST00000508501 ICA1Q05084 483 aa11.82□□□□□ -0.52
LIMCH1-208ENST00000508501 RIPPLY1Q0D2K3 151 aa11.82□□□□□ -0.52
LIMCH1-208ENST00000508501 C1DQ13901 141 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-208ENST00000508501 C2CD6Q53TS8 623 aa11.82□□□□□ -0.52
LIMCH1-208ENST00000508501 RUNDC3AQ59EK9 446 aa11.82□□□□□ -0.52
LIMCH1-208ENST00000508501 AARS2Q5JTZ9 985 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-208ENST00000508501 ZNF544Q6NX49 715 aa11.82□□□□□ -0.52
LIMCH1-208ENST00000508501 FGD2Q7Z6J4 655 aa11.82□□□□□ -0.52
LIMCH1-208ENST00000508501 DDIASQ8IXT1 998 aa11.82□□□□□ -0.52
LIMCH1-208ENST00000508501 RBBP8NLQ8NC74 664 aaPredicted RBP11.82□□□□□ -0.52
LIMCH1-208ENST00000508501 ZNF564Q8TBZ8 553 aaPredicted RBP11.82□□□□□ -0.52
LIMCH1-208ENST00000508501 TRPC4APQ8TEL6 797 aa11.82□□□□□ -0.52
LIMCH1-208ENST00000508501 UBE2OQ9C0C9 1292 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-208ENST00000508501 MMADHCQ9H3L0 296 aaPredicted RBP11.82□□□□□ -0.52
LIMCH1-208ENST00000508501 STAP1Q9ULZ2 295 aa11.82□□□□□ -0.52
LIMCH1-208ENST00000508501 SPATA2Q9UM82 520 aa11.82□□□□□ -0.52
LIMCH1-208ENST00000508501 PTPN23Q9H3S7 1636 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 EIF4E1BA6NMX2 242 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 TAF4O00268 1085 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 LCA5LO95447 670 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 PLOD1Q02809 727 aaPredicted RBP11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 TUBA3CQ13748 450 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 MAPRE1Q15691 268 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 USH1GQ495M9 461 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 FASTKD1Q53R41 847 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 TBC1D19Q8N5T2 526 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 BLMP54132 1417 aaPredicted RBP11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 STAT5AP42229 794 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 STAT5BP51692 787 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 COG2Q14746 738 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 TTC27Q6P3X3 843 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 BTN2A1Q7KYR7 527 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 LPCAT2Q7L5N7 544 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 GALNT4Q8N4A0 578 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 SPRTNQ9H040 489 aaPredicted RBP11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 CASS4Q9NQ75 786 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 C20orf96Q9NUD7 363 aaPredicted RBP11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 STOML2Q9UJZ1 356 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 ERBB4Q15303 1308 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 IFT140Q96RY7 1462 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 NOS1P29475 1434 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 SLCO1B7G3V0H7 640 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 TNPO2O14787 897 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 MFN2O95140 757 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 ATP1A3P13637 1013 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 OSBPP22059 807 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 SNX17Q15036 470 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 TIMM50Q3ZCQ8 353 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 PRMT9Q6P2P2 845 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 CYFIP1Q7L576 1253 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 DGCR14Q96DF8 476 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 SLC10A4Q96EP9 437 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 CCDC28BQ9BUN5 200 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 ISCUQ9H1K1 167 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 SYTL2Q9HCH5 934 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 NPHS2Q9NP85 383 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 LMCD1Q9NZU5 365 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 ABLIM1O14639 778 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 SNRPAP09012 282 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 TRIQKQ629K1 86 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 GLMNQ92990 594 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 EXT2Q93063 718 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 EFCAB1Q9HAE3 211 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 TRIM39Q9HCM9 518 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 AIPL1Q9NZN9 384 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 IPPQ9Y573 584 aa11.81□□□□□ -0.52
LIMCH1-208ENST00000508501 A0A0D9SFI3 127 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 PNMA6EA0A0J9YXQ4 647 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 PHF20L1A8MW92 1017 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 USP17L12C9JPN9 530 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 USP17L21D6R901 530 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 FGAP02671 866 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 ALOX5P09917 674 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 POU5F1BQ06416 359 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 PABPC4Q13310 644 aaKnown RBP eCLIP11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 WDR93Q6P2C0 686 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 FAM81AQ8TBF8 368 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 USE1Q9NZ43 259 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 SMIM31A0A1B0GVY4 71 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 AP3M2P53677 418 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 AP1S2P56377 157 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 PDAP1Q13442 181 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 CCDC157Q569K6 752 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 HABP4Q5JVS0 413 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 FAM83BQ5T0W9 1011 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 SDE2Q6IQ49 451 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 ZFP1Q6P2D0 407 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 APPL2Q8NEU8 664 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 IARS2Q9NSE4 1012 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 COMMD3-BMI1R4GMX3 469 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 STK36Q9NRP7 1315 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 SCTRP47872 440 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 BCAR1P56945 870 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 KCNK10P57789 538 aa11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 PTPN12Q05209 780 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-208ENST00000508501 BTKQ06187 659 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms