RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 DEPTORQ8TB45 409 aa12.75□□□□□ -0.37
HMGCS1-204ENST00000507293 HASPINQ8TF76 798 aa12.75□□□□□ -0.37
HMGCS1-204ENST00000507293 SMG7Q92540 1137 aaKnown RBP12.75□□□□□ -0.37
HMGCS1-204ENST00000507293 DOCK6Q96HP0 2047 aa12.75□□□□□ -0.37
HMGCS1-204ENST00000507293 RHOBTB2Q9BYZ6 727 aa12.75□□□□□ -0.37
HMGCS1-204ENST00000507293 CCDC113Q9H0I3 377 aa12.75□□□□□ -0.37
HMGCS1-204ENST00000507293 MFSD1Q9H3U5 465 aa12.75□□□□□ -0.37
HMGCS1-204ENST00000507293 WDR6Q9NNW5 1121 aaKnown RBP12.75□□□□□ -0.37
HMGCS1-204ENST00000507293 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.75□□□□□ -0.37
HMGCS1-204ENST00000507293 SNTG2Q9NY99 539 aa12.75□□□□□ -0.37
HMGCS1-204ENST00000507293 USP20Q9Y2K6 914 aa12.75□□□□□ -0.37
HMGCS1-204ENST00000507293 MYH11P35749 1972 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 SF3B1O75533 1304 aaKnown RBP eCLIP12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 H0Y858 1186 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 PTGESO14684 152 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 TGM5O43548 720 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 GALR2O43603 387 aaPredicted RBP12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 N4BP1O75113 896 aaKnown RBP12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 TADA2AO75478 443 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 RECQL4O94761 1208 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 KIF4AO95239 1232 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 GBP2P32456 591 aaPredicted RBP12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 CCT6AP40227 531 aaKnown RBP12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 RBM25P49756 843 aaKnown RBP12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 NUBP1P53384 320 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 HMGN5P82970 282 aaKnown RBP12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 PPP2R5AQ15172 486 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 ECM1Q16610 540 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 RTP2Q5QGT7 225 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 EEF1DP3Q658K8 133 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 ASTLQ6HA08 431 aaPredicted RBP12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 PRSS55Q6UWB4 352 aaPredicted RBP12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 CYP26C1Q6V0L0 522 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 NOSTRINQ8IVI9 506 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 GPR65Q8IYL9 337 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 FBXO18Q8NFZ0 1043 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 STAMQ92783 540 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 ATOH1Q92858 354 aaPredicted RBP12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 ZNF707Q96C28 371 aaPredicted RBP12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 ZSCAN31Q96LW9 406 aaPredicted RBP12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 ADPGKQ9BRR6 497 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 KIFC3Q9BVG8 833 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 CXCL16Q9H2A7 254 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 PLEKHA4Q9H4M7 779 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 KCNK12Q9HB15 430 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 POLD4Q9HCU8 107 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 FNIP2Q9P278 1114 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 NOL7Q9UMY1 257 aaKnown RBP12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 DUSP12Q9UNI6 340 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 MYH15Q9Y2K3 1946 aa12.74□□□□□ -0.37
HMGCS1-204ENST00000507293 CITO14578 2027 aa12.73□□□□□ -0.37
HMGCS1-204ENST00000507293 ACKR2O00590 384 aa12.73□□□□□ -0.37
HMGCS1-204ENST00000507293 MUTP22033 750 aa12.73□□□□□ -0.37
HMGCS1-204ENST00000507293 TRAPPC10P48553 1259 aa12.73□□□□□ -0.37
HMGCS1-204ENST00000507293 FXR2P51116 673 aaKnown RBP eCLIP12.73□□□□□ -0.374e-12■■■□□ 19
HMGCS1-204ENST00000507293 CREMQ03060 361 aa12.73□□□□□ -0.37
HMGCS1-204ENST00000507293 CWF19L1Q69YN2 538 aaKnown RBP12.73□□□□□ -0.37
HMGCS1-204ENST00000507293 C4orf32Q8N8J7 132 aa12.73□□□□□ -0.37
HMGCS1-204ENST00000507293 FLCNQ8NFG4 579 aa12.73□□□□□ -0.37
HMGCS1-204ENST00000507293 HDAC7Q8WUI4 952 aa12.73□□□□□ -0.37
HMGCS1-204ENST00000507293 MYADMQ96S97 322 aa12.73□□□□□ -0.37
HMGCS1-204ENST00000507293 NT5C3AQ9H0P0 336 aa12.73□□□□□ -0.37
HMGCS1-204ENST00000507293 IRF2BPLQ9H1B7 796 aa12.73□□□□□ -0.37
HMGCS1-204ENST00000507293 BHMT2Q9H2M3 363 aa12.73□□□□□ -0.37
HMGCS1-204ENST00000507293 PIDD1Q9HB75 910 aa12.73□□□□□ -0.37
HMGCS1-204ENST00000507293 ZDHHC7Q9NXF8 308 aa12.73□□□□□ -0.37
HMGCS1-204ENST00000507293 IGSF9Q9P2J2 1179 aa12.73□□□□□ -0.37
HMGCS1-204ENST00000507293 LRWD1Q9UFC0 647 aa12.73□□□□□ -0.37
HMGCS1-204ENST00000507293 GDAQ9Y2T3 454 aa12.73□□□□□ -0.37
HMGCS1-204ENST00000507293 PDCD11Q14690 1871 aaKnown RBP12.73□□□□□ -0.37
HMGCS1-204ENST00000507293 WDFY4Q6ZS81 3184 aa12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 NARSO43776 548 aaKnown RBP12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 PAPLNO95428 1278 aa12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 C1RP00736 705 aa12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 THP07101 528 aa12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 NAB2Q15742 525 aa12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 DCAF4L1Q3SXM0 396 aa12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 FAM171A1Q5VUB5 890 aa12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 LILRA6Q6PI73 481 aa12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 GET4Q7L5D6 327 aaPredicted RBP12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 CEP57Q86XR8 500 aa12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 SNX29Q8TEQ0 813 aa12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 RSAD2Q8WXG1 361 aa12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 KIFAP3Q92845 792 aa12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 IFT74Q96LB3 600 aa12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 KIF2CQ99661 725 aa12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 TTPALQ9BTX7 342 aa12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 PRKD2Q9BZL6 878 aa12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 SH2B1Q9NRF2 756 aaPredicted RBP12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 DDX19AQ9NUU7 478 aaKnown RBP12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 EPS15L1Q9UBC2 864 aa12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 FBXW11Q9UKB1 542 aa12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 FBXL21Q9UKT6 434 aa12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 KIAA1024Q9UPX6 916 aa12.72□□□□□ -0.37
HMGCS1-204ENST00000507293 GFRA3O60609 400 aa12.71□□□□□ -0.37
HMGCS1-204ENST00000507293 ZMYND10O75800 440 aa12.71□□□□□ -0.37
HMGCS1-204ENST00000507293 CENPBP07199 599 aaPredicted RBP12.71□□□□□ -0.37
HMGCS1-204ENST00000507293 NPR3P17342 541 aa12.71□□□□□ -0.37
HMGCS1-204ENST00000507293 TOB1P50616 345 aaPredicted RBP12.71□□□□□ -0.37
HMGCS1-204ENST00000507293 CLCN5P51795 746 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms