RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 GNA14O95837 355 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 ATF7P17544 494 aaPredicted RBP9.23□□□□□ -0.93
PDGFC-205ENST00000506880 LIG1P18858 919 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 ERVK-21P61565 698 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 RAD51AP2Q09MP3 1159 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 NOMO2Q5JPE7 1267 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 C9orf50Q5SZB4 431 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 CENPPQ6IPU0 288 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 PDXDC1Q6P996 788 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 ALKAL1Q6UXT8 129 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 FIBCD1Q8N539 461 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 SPATA18Q8TC71 538 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 PPP1R13LQ8WUF5 828 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 CACTINQ8WUQ7 758 aaKnown RBP9.23□□□□□ -0.93
PDGFC-205ENST00000506880 SCFD1Q8WVM8 642 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 TGS1Q96RS0 853 aaKnown RBP9.23□□□□□ -0.93
PDGFC-205ENST00000506880 RPS6KC1Q96S38 1066 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 TSG101Q99816 390 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 C11orf84Q9BUA3 381 aaPredicted RBP9.23□□□□□ -0.93
PDGFC-205ENST00000506880 TARS2Q9BW92 718 aaKnown RBP9.23□□□□□ -0.93
PDGFC-205ENST00000506880 CDT1Q9H211 546 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 SLC28A3Q9HAS3 691 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 CXXC1Q9P0U4 656 aaPredicted RBP9.23□□□□□ -0.93
PDGFC-205ENST00000506880 AGO2Q9UKV8 859 aaKnown RBP9.23□□□□□ -0.93
PDGFC-205ENST00000506880 PCDHB12Q9Y5F1 795 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 PCDHA5Q9Y5H7 936 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 LAMA2P24043 3122 aaKnown RBP9.23□□□□□ -0.93
PDGFC-205ENST00000506880 ANK1P16157 1881 aa9.23□□□□□ -0.93
PDGFC-205ENST00000506880 A0A087WWV3 80 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 NPHP3-ACAD11A0A0J9YXS1 232 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 ZNF233A6NK53 670 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 IKBKBO14920 756 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 NCK2O43639 380 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 FAM189A1O60320 539 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 STX10O60499 249 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 OFD1O75665 1012 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 THP07101 528 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 FAM163BP0C2L3 166 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 DNAJB2P25686 324 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 ERCC5P28715 1186 aaPredicted RBP9.22□□□□□ -0.93
PDGFC-205ENST00000506880 NMT1P30419 496 aaKnown RBP9.22□□□□□ -0.93
PDGFC-205ENST00000506880 FKBP3Q00688 224 aaKnown RBP9.22□□□□□ -0.93
PDGFC-205ENST00000506880 PLCB3Q01970 1234 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 CREMQ03060 361 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 PPP2R3AQ06190 1150 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 DSC1Q08554 894 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 MORC3Q14149 939 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 BTG3Q14201 252 aaPredicted RBP9.22□□□□□ -0.93
PDGFC-205ENST00000506880 HABP4Q5JVS0 413 aaKnown RBP9.22□□□□□ -0.93
PDGFC-205ENST00000506880 CCDC183Q5T5S1 534 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 ARMCX5Q6P1M9 558 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 GPD1LQ8N335 351 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 SMG8Q8ND04 991 aaKnown RBP9.22□□□□□ -0.93
PDGFC-205ENST00000506880 POMGNT1Q8WZA1 660 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 PPP2R3CQ969Q6 453 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 TIFAQ96CG3 184 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 CEP63Q96MT8 703 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 CASD1Q96PB1 797 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 ANP32EQ9BTT0 268 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 MSTO1Q9BUK6 570 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 KCTD10Q9H3F6 313 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 RPF1Q9H9Y2 349 aaKnown RBP9.22□□□□□ -0.93
PDGFC-205ENST00000506880 DMAC2Q9NW81 257 aa9.22□□□□□ -0.93
PDGFC-205ENST00000506880 CPSF3Q9UKF6 684 aaKnown RBP9.22□□□□□ -0.93
PDGFC-205ENST00000506880 TRANK1O15050 2925 aa9.21□□□□□ -0.93
PDGFC-205ENST00000506880 TTC26A0AVF1 554 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 ARL5CA6NH57 179 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 SLC16A3O15427 465 aaKnown RBP9.21□□□□□ -0.94
PDGFC-205ENST00000506880 B4GALT5O43286 388 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 TRAPPC3O43617 180 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 GADD45BO75293 160 aaPredicted RBP9.21□□□□□ -0.94
PDGFC-205ENST00000506880 NPTXRO95502 500 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 GTF2H1P32780 548 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 PNPLA4P41247 253 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 ALDH7A1P49419 539 aaKnown RBP9.21□□□□□ -0.94
PDGFC-205ENST00000506880 DEFB103AP81534 67 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 KRT17Q04695 432 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 STK4Q13043 487 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 TUSC3Q13454 348 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 PTPROQ16827 1216 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 ZNF697Q5TEC3 545 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.21□□□□□ -0.94
PDGFC-205ENST00000506880 AGMOQ6ZNB7 445 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 INTS8Q75QN2 995 aaKnown RBP9.21□□□□□ -0.94
PDGFC-205ENST00000506880 RTL10Q7L3V2 364 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 BRSK2Q8IWQ3 736 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 ZC3H3Q8IXZ2 948 aaKnown RBP9.21□□□□□ -0.94
PDGFC-205ENST00000506880 XXYLT1Q8NBI6 393 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 KIAA0895Q8NCT3 520 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 TMC2Q8TDI7 906 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 NOC3LQ8WTT2 800 aaKnown RBP9.21□□□□□ -0.94
PDGFC-205ENST00000506880 SNX27Q96L92 541 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 ZNF558Q96NG5 402 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 FAM193BQ96PV7 902 aaPredicted RBP9.21□□□□□ -0.94
PDGFC-205ENST00000506880 KIFC3Q9BVG8 833 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 PBX4Q9BYU1 374 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 BLZF1Q9H2G9 400 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 METTL14Q9HCE5 456 aaKnown RBP9.21□□□□□ -0.94
PDGFC-205ENST00000506880 AGPAT3Q9NRZ7 376 aa9.21□□□□□ -0.94
PDGFC-205ENST00000506880 PUF60Q9UHX1 559 aaKnown RBP9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms