RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 HAPLN2Q9GZV7 340 aa13.02□□□□□ -0.33
PDLIM5-208ENST00000504489 CLSTN2Q9H4D0 955 aa13.02□□□□□ -0.33
PDLIM5-208ENST00000504489 YBX2Q9Y2T7 364 aaKnown RBP13.02□□□□□ -0.33
PDLIM5-208ENST00000504489 GIT1Q9Y2X7 761 aa13.02□□□□□ -0.33
PDLIM5-208ENST00000504489 A0A0B4J269 797 aa13.01□□□□□ -0.33
PDLIM5-208ENST00000504489 INPPL1O15357 1258 aa13.01□□□□□ -0.33
PDLIM5-208ENST00000504489 OFD1O75665 1012 aa13.01□□□□□ -0.33
PDLIM5-208ENST00000504489 MBD3O95983 291 aa13.01□□□□□ -0.33
PDLIM5-208ENST00000504489 FGFR1P11362 822 aa13.01□□□□□ -0.33
PDLIM5-208ENST00000504489 MYOGP15173 224 aa13.01□□□□□ -0.33
PDLIM5-208ENST00000504489 GRM5P41594 1212 aa13.01□□□□□ -0.33
PDLIM5-208ENST00000504489 GATMP50440 423 aa13.01□□□□□ -0.33
PDLIM5-208ENST00000504489 SNRPFP62306 86 aaKnown RBP13.01□□□□□ -0.33
PDLIM5-208ENST00000504489 KNOP1Q1ED39 458 aaKnown RBP13.01□□□□□ -0.33
PDLIM5-208ENST00000504489 GLB1LQ6UWU2 654 aa13.01□□□□□ -0.33
PDLIM5-208ENST00000504489 ZBTB33Q86T24 672 aa13.01□□□□□ -0.33
PDLIM5-208ENST00000504489 ABI1Q8IZP0 508 aa13.01□□□□□ -0.33
PDLIM5-208ENST00000504489 ERCC4Q92889 916 aaPredicted RBP13.01□□□□□ -0.33
PDLIM5-208ENST00000504489 CASD1Q96PB1 797 aa13.01□□□□□ -0.33
PDLIM5-208ENST00000504489 GBP3Q9H0R5 595 aa13.01□□□□□ -0.33
PDLIM5-208ENST00000504489 IKZF4Q9H2S9 585 aa13.01□□□□□ -0.33
PDLIM5-208ENST00000504489 RSAD1Q9HA92 442 aa13.01□□□□□ -0.33
PDLIM5-208ENST00000504489 ANKFY1Q9P2R3 1169 aa13.01□□□□□ -0.33
PDLIM5-208ENST00000504489 HES2Q9Y543 173 aa13.01□□□□□ -0.33
PDLIM5-208ENST00000504489 COL4A4P53420 1690 aaPredicted RBP13.01□□□□□ -0.33
PDLIM5-208ENST00000504489 MYO7AQ13402 2215 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 SCN1AP35498 2009 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 LCHNA4D1U4 455 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 LINC01553A4QN01 128 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 TBKBP1A7MCY6 615 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 SOX1O00570 391 aaPredicted RBP13□□□□□ -0.33
PDLIM5-208ENST00000504489 OGTO15294 1046 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 TGFB1I1O43294 461 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 RECQL4O94761 1208 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 KIF20AO95235 890 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 CA3P07451 260 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 GARTP22102 1010 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 ADSSP30520 456 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 MATR3P43243 847 aaKnown RBP eCLIP13□□□□□ -0.33
PDLIM5-208ENST00000504489 EMP3P54852 163 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 BTG3Q14201 252 aaPredicted RBP13□□□□□ -0.33
PDLIM5-208ENST00000504489 CAMK4Q16566 473 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 KYAT1Q16773 422 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 COBLL1Q53SF7 1204 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 NOMO2Q5JPE7 1267 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 ZNF658Q5TYW1 1059 aaPredicted RBP13□□□□□ -0.33
PDLIM5-208ENST00000504489 GPR153Q6NV75 609 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 GUF1Q8N442 669 aaKnown RBP13□□□□□ -0.33
PDLIM5-208ENST00000504489 HELQQ8TDG4 1101 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 POMGNT1Q8WZA1 660 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 CCDC94Q9BW85 323 aaPredicted RBP13□□□□□ -0.33
PDLIM5-208ENST00000504489 APOL6Q9BWW8 343 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 NUP62CLQ9H1M0 184 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 NKX2-4Q9H2Z4 354 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 SNTG2Q9NY99 539 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 KIAA1468Q9P260 1216 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 CGNQ9P2M7 1197 aaKnown RBP13□□□□□ -0.33
PDLIM5-208ENST00000504489 KANSL3Q9P2N6 904 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 MAN1B1Q9UKM7 699 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 GDAQ9Y2T3 454 aa13□□□□□ -0.33
PDLIM5-208ENST00000504489 TMEM265A0A087WTH1 108 aa12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 ARL5CA6NH57 179 aa12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 TISP43B9A030 160 aa12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 KIAA0391O15091 583 aaKnown RBP12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 FAM189A1O60320 539 aa12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 CLTAP09496 248 aa12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 AKAP5P24588 427 aa12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 POU5F1Q01860 360 aaKnown RBP12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 TAP1Q03518 808 aa12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 PAN2Q504Q3 1202 aaKnown RBP12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 HS2ST1Q7LGA3 356 aa12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 NELFCDQ8IXH7 590 aa12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 THNSL1Q8IYQ7 743 aa12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 FIBCD1Q8N539 461 aa12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 CEP120Q8N960 986 aa12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 URGCPQ8TCY9 931 aa12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 CLP1Q92989 425 aaKnown RBP12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 TIFAQ96CG3 184 aa12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 ACAP3Q96P50 834 aa12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 GAD1Q99259 594 aa12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 MSTO1Q9BUK6 570 aa12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 MRPL9Q9BYD2 267 aaKnown RBP12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 SLC28A3Q9HAS3 691 aa12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 TOPORSQ9NS56 1045 aaPredicted RBP12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 PARP2Q9UGN5 583 aa12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 AGO2Q9UKV8 859 aaKnown RBP12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 CHD9Q3L8U1 2897 aa12.99□□□□□ -0.33
PDLIM5-208ENST00000504489 CHD7Q9P2D1 2997 aa12.98□□□□□ -0.33
PDLIM5-208ENST00000504489 LDHAP00338 332 aaKnown RBP12.98□□□□□ -0.33
PDLIM5-208ENST00000504489 LINC00271P0C7V0 271 aa12.98□□□□□ -0.33
PDLIM5-208ENST00000504489 HARSP12081 509 aaKnown RBP12.98□□□□□ -0.33
PDLIM5-208ENST00000504489 PTMSP20962 102 aa12.98□□□□□ -0.33
PDLIM5-208ENST00000504489 MLH1P40692 756 aa12.98□□□□□ -0.33
PDLIM5-208ENST00000504489 YARSP54577 528 aaKnown RBP12.98□□□□□ -0.33
PDLIM5-208ENST00000504489 MORC3Q14149 939 aa12.98□□□□□ -0.33
PDLIM5-208ENST00000504489 XKR4Q5GH76 650 aa12.98□□□□□ -0.33
PDLIM5-208ENST00000504489 PPP2R2DQ66LE6 453 aa12.98□□□□□ -0.33
PDLIM5-208ENST00000504489 ARMCX5Q6P1M9 558 aa12.98□□□□□ -0.33
PDLIM5-208ENST00000504489 ALKAL1Q6UXT8 129 aa12.98□□□□□ -0.33
PDLIM5-208ENST00000504489 LRRC55Q6ZSA7 311 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms