RNA–Protein interactions for RNA: ENST00000498056.1

CPNE1-227, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 362 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-227ENST00000498056 ZNF165P49910 485 aa14.78□□□□□ -0.04
CPNE1-227ENST00000498056 YARSP54577 528 aaKnown RBP14.78□□□□□ -0.04
CPNE1-227ENST00000498056 DEFB103AP81534 67 aa14.78□□□□□ -0.04
CPNE1-227ENST00000498056 MLLT1Q03111 559 aaPredicted RBP14.78□□□□□ -0.04
CPNE1-227ENST00000498056 ADAM9Q13443 819 aa14.78□□□□□ -0.04
CPNE1-227ENST00000498056 SNRNP35Q16560 246 aaKnown RBP14.78□□□□□ -0.04
CPNE1-227ENST00000498056 NFIL3Q16649 462 aa14.78□□□□□ -0.04
CPNE1-227ENST00000498056 HSP90AA4PQ58FG1 418 aa14.78□□□□□ -0.04
CPNE1-227ENST00000498056 TMEM240Q5SV17 173 aa14.78□□□□□ -0.04
CPNE1-227ENST00000498056 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.78□□□□□ -0.04
CPNE1-227ENST00000498056 LRRC55Q6ZSA7 311 aa14.78□□□□□ -0.04
CPNE1-227ENST00000498056 RTN4RL1Q86UN2 441 aaPredicted RBP14.78□□□□□ -0.04
CPNE1-227ENST00000498056 ECHDC2Q86YB7 292 aa14.78□□□□□ -0.04
CPNE1-227ENST00000498056 CBWD2Q8IUF1 395 aa14.78□□□□□ -0.04
CPNE1-227ENST00000498056 TMEM192Q8IY95 271 aa14.78□□□□□ -0.04
CPNE1-227ENST00000498056 RDH13Q8NBN7 331 aa14.78□□□□□ -0.04
CPNE1-227ENST00000498056 SMG8Q8ND04 991 aaKnown RBP14.78□□□□□ -0.04
CPNE1-227ENST00000498056 FAM212AQ96EL1 285 aa14.78□□□□□ -0.04
CPNE1-227ENST00000498056 DUSP9Q99956 384 aaKnown RBP14.78□□□□□ -0.04
CPNE1-227ENST00000498056 MTIF3Q9H2K0 278 aaKnown RBP14.78□□□□□ -0.04
CPNE1-227ENST00000498056 RBAKQ9NYW8 714 aaPredicted RBP14.78□□□□□ -0.04
CPNE1-227ENST00000498056 FRMD4BQ9Y2L6 1034 aa14.78□□□□□ -0.04
CPNE1-227ENST00000498056 MEIS3P2A8K0S8 358 aa14.77□□□□□ -0.05
CPNE1-227ENST00000498056 EXTL3O43909 919 aa14.77□□□□□ -0.05
CPNE1-227ENST00000498056 UPP2O95045 317 aa14.77□□□□□ -0.05
CPNE1-227ENST00000498056 LDHAP00338 332 aaKnown RBP14.77□□□□□ -0.05
CPNE1-227ENST00000498056 FGFR1P11362 822 aa14.77□□□□□ -0.05
CPNE1-227ENST00000498056 MLH1P40692 756 aa14.77□□□□□ -0.05
CPNE1-227ENST00000498056 CASP4P49662 377 aa14.77□□□□□ -0.05
CPNE1-227ENST00000498056 FKBP3Q00688 224 aaKnown RBP14.77□□□□□ -0.05
CPNE1-227ENST00000498056 PPP2R3AQ06190 1150 aa14.77□□□□□ -0.05
CPNE1-227ENST00000498056 HSP90AA2PQ14568 343 aaPredicted RBP14.77□□□□□ -0.05
CPNE1-227ENST00000498056 KYAT1Q16773 422 aa14.77□□□□□ -0.05
CPNE1-227ENST00000498056 CCDC40Q4G0X9 1142 aa14.77□□□□□ -0.05
CPNE1-227ENST00000498056 CT47A1Q5JQC4 288 aaPredicted RBP14.77□□□□□ -0.05
CPNE1-227ENST00000498056 C16orf59Q7L2K0 433 aa14.77□□□□□ -0.05
CPNE1-227ENST00000498056 SLC9A9Q8IVB4 645 aa14.77□□□□□ -0.05
CPNE1-227ENST00000498056 FAM186BQ8IYM0 893 aa14.77□□□□□ -0.05
CPNE1-227ENST00000498056 PGBD4Q96DM1 585 aa14.77□□□□□ -0.05
CPNE1-227ENST00000498056 CEP63Q96MT8 703 aa14.77□□□□□ -0.05
CPNE1-227ENST00000498056 RPS6KC1Q96S38 1066 aa14.77□□□□□ -0.05
CPNE1-227ENST00000498056 TRAIPQ9BWF2 469 aa14.77□□□□□ -0.05
CPNE1-227ENST00000498056 UBE2OQ9C0C9 1292 aaKnown RBP14.77□□□□□ -0.05
CPNE1-227ENST00000498056 RPF1Q9H9Y2 349 aaKnown RBP14.77□□□□□ -0.05
CPNE1-227ENST00000498056 TOPORSQ9NS56 1045 aaPredicted RBP14.77□□□□□ -0.05
CPNE1-227ENST00000498056 INPP5FQ9Y2H2 1132 aa14.77□□□□□ -0.05
CPNE1-227ENST00000498056 NFE2L3Q9Y4A8 694 aa14.77□□□□□ -0.05
CPNE1-227ENST00000498056 BECN2A8MW95 431 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 ENPP3O14638 875 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 SLC16A3O15427 465 aaKnown RBP14.76□□□□□ -0.05
CPNE1-227ENST00000498056 AKAP3O75969 853 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 CLTAP09496 248 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 MYBPC2Q14324 1141 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 FAM117BQ6P1L5 589 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 FOXR2Q6PJQ5 311 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 FAM43BQ6ZT52 329 aaPredicted RBP14.76□□□□□ -0.05
CPNE1-227ENST00000498056 TMCO2Q7Z6W1 182 aaPredicted RBP14.76□□□□□ -0.05
CPNE1-227ENST00000498056 ZNF598Q86UK7 904 aaKnown RBP14.76□□□□□ -0.05
CPNE1-227ENST00000498056 NPAS4Q8IUM7 802 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 CREBRFQ8IUR6 639 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 BRSK2Q8IWQ3 736 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 ABI1Q8IZP0 508 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 RNF214Q8ND24 703 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 FAM200AQ8TCP9 573 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 SNX27Q96L92 541 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 RNPC3Q96LT9 517 aaKnown RBP14.76□□□□□ -0.05
CPNE1-227ENST00000498056 ACAP3Q96P50 834 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 MED15Q96RN5 788 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 BPIFA3Q9BQP9 254 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 ANP32EQ9BTT0 268 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 SRRTQ9BXP5 876 aaKnown RBP14.76□□□□□ -0.05
CPNE1-227ENST00000498056 RSAD1Q9HA92 442 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 CBX8Q9HC52 389 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 DMAC2Q9NW81 257 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 TMEM161AQ9NX61 479 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 KLK14Q9P0G3 267 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 CPSF3Q9UKF6 684 aaKnown RBP14.76□□□□□ -0.05
CPNE1-227ENST00000498056 PCDHB7Q9Y5E2 793 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 SCN1AP35498 2009 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 TSC2P49815 1807 aa14.76□□□□□ -0.05
CPNE1-227ENST00000498056 ZNF233A6NK53 670 aa14.75□□□□□ -0.05
CPNE1-227ENST00000498056 FGFR1OPO95684 399 aaKnown RBP14.75□□□□□ -0.05
CPNE1-227ENST00000498056 CAVIN2O95810 425 aa14.75□□□□□ -0.05
CPNE1-227ENST00000498056 PSMC2P35998 433 aaKnown RBP14.75□□□□□ -0.05
CPNE1-227ENST00000498056 ENOX2Q16206 610 aaKnown RBP14.75□□□□□ -0.05
CPNE1-227ENST00000498056 DCAF17Q5H9S7 520 aaPredicted RBP14.75□□□□□ -0.05
CPNE1-227ENST00000498056 GLRA4Q5JXX5 417 aa14.75□□□□□ -0.05
CPNE1-227ENST00000498056 C9orf50Q5SZB4 431 aa14.75□□□□□ -0.05
CPNE1-227ENST00000498056 SPATA1Q5VX52 437 aa14.75□□□□□ -0.05
CPNE1-227ENST00000498056 CRELD2Q6UXH1 353 aaPredicted RBP14.75□□□□□ -0.05
CPNE1-227ENST00000498056 LUZP1Q86V48 1076 aa14.75□□□□□ -0.05
CPNE1-227ENST00000498056 FAM114A1Q8IWE2 563 aa14.75□□□□□ -0.05
CPNE1-227ENST00000498056 ZC3H3Q8IXZ2 948 aaKnown RBP14.75□□□□□ -0.05
CPNE1-227ENST00000498056 ENOX1Q8TC92 643 aaKnown RBP14.75□□□□□ -0.05
CPNE1-227ENST00000498056 HELQQ8TDG4 1101 aa14.75□□□□□ -0.05
CPNE1-227ENST00000498056 HERVK_113Q902F9 699 aa14.75□□□□□ -0.05
CPNE1-227ENST00000498056 CNOT6LQ96LI5 555 aaKnown RBP14.75□□□□□ -0.05
CPNE1-227ENST00000498056 ZFP42Q96MM3 310 aa14.75□□□□□ -0.05
CPNE1-227ENST00000498056 RNF39Q9H2S5 420 aa14.75□□□□□ -0.05
CPNE1-227ENST00000498056 ELAC1Q9H777 363 aaKnown RBP14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms