RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 LRCH3Q96II8 777 aa18.66■□□□□ 0.58
HDAC6-235ENST00000495515 GAD1Q99259 594 aa18.66■□□□□ 0.58
HDAC6-235ENST00000495515 NKX2-4Q9H2Z4 354 aa18.66■□□□□ 0.58
HDAC6-235ENST00000495515 RNF19AQ9NV58 838 aa18.66■□□□□ 0.58
HDAC6-235ENST00000495515 TYW1Q9NV66 732 aaKnown RBP18.66■□□□□ 0.58
HDAC6-235ENST00000495515 YBX2Q9Y2T7 364 aaKnown RBP18.66■□□□□ 0.58
HDAC6-235ENST00000495515 RWDD3Q9Y3V2 267 aa18.66■□□□□ 0.58
HDAC6-235ENST00000495515 ARL5CA6NH57 179 aa18.65■□□□□ 0.58
HDAC6-235ENST00000495515 MEIS3P2A8K0S8 358 aa18.65■□□□□ 0.58
HDAC6-235ENST00000495515 PDXKO00764 312 aa18.65■□□□□ 0.58
HDAC6-235ENST00000495515 INPPL1O15357 1258 aa18.65■□□□□ 0.58
HDAC6-235ENST00000495515 CALUO43852 315 aaPredicted RBP18.65■□□□□ 0.58
HDAC6-235ENST00000495515 MYOGP15173 224 aa18.65■□□□□ 0.58
HDAC6-235ENST00000495515 ADSSP30520 456 aa18.65■□□□□ 0.58
HDAC6-235ENST00000495515 HOXD13P35453 343 aa18.65■□□□□ 0.58
HDAC6-235ENST00000495515 GATMP50440 423 aa18.65■□□□□ 0.58
HDAC6-235ENST00000495515 POU5F1Q01860 360 aaKnown RBP18.65■□□□□ 0.58
HDAC6-235ENST00000495515 SPOUT1Q5T280 376 aaKnown RBP18.65■□□□□ 0.58
HDAC6-235ENST00000495515 CEP120Q8N960 986 aa18.65■□□□□ 0.58
HDAC6-235ENST00000495515 SYAP1Q96A49 352 aaPredicted RBP18.65■□□□□ 0.58
HDAC6-235ENST00000495515 SAMD11Q96NU1 681 aa18.65■□□□□ 0.58
HDAC6-235ENST00000495515 FAM193BQ96PV7 902 aaPredicted RBP18.65■□□□□ 0.58
HDAC6-235ENST00000495515 RPF1Q9H9Y2 349 aaKnown RBP18.65■□□□□ 0.58
HDAC6-235ENST00000495515 PLEKHA5Q9HAU0 1116 aa18.65■□□□□ 0.58
HDAC6-235ENST00000495515 KIAA1586Q9HCI6 787 aa18.65■□□□□ 0.58
HDAC6-235ENST00000495515 AAASQ9NRG9 546 aa18.65■□□□□ 0.58
HDAC6-235ENST00000495515 AGPAT3Q9NRZ7 376 aa18.65■□□□□ 0.58
HDAC6-235ENST00000495515 MAPK8IP1Q9UQF2 711 aa18.65■□□□□ 0.58
HDAC6-235ENST00000495515 LCHNA4D1U4 455 aa18.64■□□□□ 0.57
HDAC6-235ENST00000495515 LINC01553A4QN01 128 aa18.64■□□□□ 0.57
HDAC6-235ENST00000495515 TISP43B9A030 160 aa18.64■□□□□ 0.57
HDAC6-235ENST00000495515 TGFB1I1O43294 461 aa18.64■□□□□ 0.57
HDAC6-235ENST00000495515 MORC3Q14149 939 aa18.64■□□□□ 0.57
HDAC6-235ENST00000495515 CBWD1Q9BRT8 395 aa18.64■□□□□ 0.57
HDAC6-235ENST00000495515 HAPLN2Q9GZV7 340 aa18.64■□□□□ 0.57
HDAC6-235ENST00000495515 IKZF4Q9H2S9 585 aa18.64■□□□□ 0.57
HDAC6-235ENST00000495515 KLK14Q9P0G3 267 aa18.64■□□□□ 0.57
HDAC6-235ENST00000495515 BIN1O00499 593 aa18.63■□□□□ 0.57
HDAC6-235ENST00000495515 PSMA7O14818 248 aa18.63■□□□□ 0.57
HDAC6-235ENST00000495515 EXTL3O43909 919 aa18.63■□□□□ 0.57
HDAC6-235ENST00000495515 LAG3P18627 525 aa18.63■□□□□ 0.57
HDAC6-235ENST00000495515 GRIK3Q13003 919 aa18.63■□□□□ 0.57
HDAC6-235ENST00000495515 CCDC183Q5T5S1 534 aa18.63■□□□□ 0.57
HDAC6-235ENST00000495515 ISM2Q6H9L7 571 aa18.63■□□□□ 0.57
HDAC6-235ENST00000495515 GPR153Q6NV75 609 aa18.63■□□□□ 0.57
HDAC6-235ENST00000495515 CD302Q8IX05 232 aa18.63■□□□□ 0.57
HDAC6-235ENST00000495515 C12orf56Q8IXR9 622 aa18.63■□□□□ 0.57
HDAC6-235ENST00000495515 SMYD4Q8IYR2 804 aaPredicted RBP18.63■□□□□ 0.57
HDAC6-235ENST00000495515 GPD1LQ8N335 351 aa18.63■□□□□ 0.57
HDAC6-235ENST00000495515 ZFP42Q96MM3 310 aa18.63■□□□□ 0.57
HDAC6-235ENST00000495515 TGS1Q96RS0 853 aaKnown RBP18.63■□□□□ 0.57
HDAC6-235ENST00000495515 TSPAN18Q96SJ8 248 aa18.63■□□□□ 0.57
HDAC6-235ENST00000495515 KCTD10Q9H3F6 313 aa18.63■□□□□ 0.57
HDAC6-235ENST00000495515 TBC1D13Q9NVG8 400 aa18.63■□□□□ 0.57
HDAC6-235ENST00000495515 HSPBP1Q9NZL4 362 aa18.63■□□□□ 0.57
HDAC6-235ENST00000495515 CPSF3Q9UKF6 684 aaKnown RBP18.63■□□□□ 0.57
HDAC6-235ENST00000495515 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.63■□□□□ 0.57
HDAC6-235ENST00000495515 MRPL42Q9Y6G3 142 aaKnown RBP18.63■□□□□ 0.57
HDAC6-235ENST00000495515 COL4A6Q14031 1691 aa18.63■□□□□ 0.57
HDAC6-235ENST00000495515 FAM189A1O60320 539 aa18.62■□□□□ 0.57
HDAC6-235ENST00000495515 POMCP01189 267 aa18.62■□□□□ 0.57
HDAC6-235ENST00000495515 THP07101 528 aa18.62■□□□□ 0.57
HDAC6-235ENST00000495515 RPL13P26373 211 aaKnown RBP18.62■□□□□ 0.57
HDAC6-235ENST00000495515 PRCPP42785 496 aa18.62■□□□□ 0.57
HDAC6-235ENST00000495515 ACOT2P49753 483 aa18.62■□□□□ 0.57
HDAC6-235ENST00000495515 SCNN1GP51170 649 aa18.62■□□□□ 0.57
HDAC6-235ENST00000495515 TAP1Q03518 808 aa18.62■□□□□ 0.57
HDAC6-235ENST00000495515 PPP2R3AQ06190 1150 aa18.62■□□□□ 0.57
HDAC6-235ENST00000495515 MYBPC2Q14324 1141 aa18.62■□□□□ 0.57
HDAC6-235ENST00000495515 SKOR2Q2VWA4 1001 aaPredicted RBP18.62■□□□□ 0.57
HDAC6-235ENST00000495515 SEZ6Q53EL9 994 aa18.62■□□□□ 0.57
HDAC6-235ENST00000495515 ZNF697Q5TEC3 545 aa18.62■□□□□ 0.57
HDAC6-235ENST00000495515 TMEM192Q8IY95 271 aa18.62■□□□□ 0.57
HDAC6-235ENST00000495515 XXYLT1Q8NBI6 393 aa18.62■□□□□ 0.57
HDAC6-235ENST00000495515 NOC3LQ8WTT2 800 aaKnown RBP18.62■□□□□ 0.57
HDAC6-235ENST00000495515 CLP1Q92989 425 aaKnown RBP18.62■□□□□ 0.57
HDAC6-235ENST00000495515 DHTKD1Q96HY7 919 aaPredicted RBP18.62■□□□□ 0.57
HDAC6-235ENST00000495515 SNX27Q96L92 541 aa18.62■□□□□ 0.57
HDAC6-235ENST00000495515 TSG101Q99816 390 aa18.62■□□□□ 0.57
HDAC6-235ENST00000495515 FAM213AQ9BRX8 229 aa18.62■□□□□ 0.57
HDAC6-235ENST00000495515 PCIF1Q9H4Z3 704 aa18.62■□□□□ 0.57
HDAC6-235ENST00000495515 SLC38A7Q9NVC3 462 aa18.62■□□□□ 0.57
HDAC6-235ENST00000495515 TRAF3IP3Q9Y228 551 aa18.62■□□□□ 0.57
HDAC6-235ENST00000495515 PCDHB12Q9Y5F1 795 aa18.62■□□□□ 0.57
HDAC6-235ENST00000495515 CLIC2O15247 247 aa18.61■□□□□ 0.57
HDAC6-235ENST00000495515 CXCL8P10145 99 aa18.61■□□□□ 0.57
HDAC6-235ENST00000495515 CYP2J2P51589 502 aa18.61■□□□□ 0.57
HDAC6-235ENST00000495515 ERVK-21P61565 698 aa18.61■□□□□ 0.57
HDAC6-235ENST00000495515 KLHL40Q2TBA0 621 aa18.61■□□□□ 0.57
HDAC6-235ENST00000495515 SLC10A6Q3KNW5 377 aa18.61■□□□□ 0.57
HDAC6-235ENST00000495515 XKR4Q5GH76 650 aa18.61■□□□□ 0.57
HDAC6-235ENST00000495515 SLC9A9Q8IVB4 645 aa18.61■□□□□ 0.57
HDAC6-235ENST00000495515 ADSSL1Q8N142 457 aa18.61■□□□□ 0.57
HDAC6-235ENST00000495515 TMEM174Q8WUU8 243 aa18.61■□□□□ 0.57
HDAC6-235ENST00000495515 SAAL1Q96ER3 474 aa18.61■□□□□ 0.57
HDAC6-235ENST00000495515 PLVAPQ9BX97 442 aa18.61■□□□□ 0.57
HDAC6-235ENST00000495515 ZNF576Q9H609 170 aa18.61■□□□□ 0.57
HDAC6-235ENST00000495515 CNTN3Q9P232 1028 aa18.61■□□□□ 0.57
HDAC6-235ENST00000495515 ZNF233A6NK53 670 aa18.6■□□□□ 0.57
HDAC6-235ENST00000495515 XPOTO43592 962 aaKnown RBP18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms