RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 NFX1Q12986 1120 aaKnown RBP12.4□□□□□ -0.42
MCF2L-231ENST00000494043 NR1I3Q14994 352 aa12.4□□□□□ -0.42
MCF2L-231ENST00000494043 PSMD6Q15008 389 aa12.4□□□□□ -0.42
MCF2L-231ENST00000494043 KYAT1Q16773 422 aa12.4□□□□□ -0.42
MCF2L-231ENST00000494043 SEZ6Q53EL9 994 aa12.4□□□□□ -0.42
MCF2L-231ENST00000494043 UBXN11Q5T124 520 aa12.4□□□□□ -0.42
MCF2L-231ENST00000494043 TCERG1LQ5VWI1 586 aa12.4□□□□□ -0.42
MCF2L-231ENST00000494043 BRSK2Q8IWQ3 736 aa12.4□□□□□ -0.42
MCF2L-231ENST00000494043 THNSL1Q8IYQ7 743 aa12.4□□□□□ -0.42
MCF2L-231ENST00000494043 CEP120Q8N960 986 aa12.4□□□□□ -0.42
MCF2L-231ENST00000494043 PLEKHO2Q8TD55 490 aa12.4□□□□□ -0.42
MCF2L-231ENST00000494043 TMC2Q8TDI7 906 aa12.4□□□□□ -0.42
MCF2L-231ENST00000494043 SLC35C1Q96A29 364 aa12.4□□□□□ -0.42
MCF2L-231ENST00000494043 EIF2AQ9BY44 585 aaKnown RBP12.4□□□□□ -0.42
MCF2L-231ENST00000494043 HIPK3Q9H422 1215 aa12.4□□□□□ -0.42
MCF2L-231ENST00000494043 CHST12Q9NRB3 414 aa12.4□□□□□ -0.42
MCF2L-231ENST00000494043 TBX21Q9UL17 535 aa12.4□□□□□ -0.42
MCF2L-231ENST00000494043 PADI3Q9ULW8 664 aa12.4□□□□□ -0.42
MCF2L-231ENST00000494043 UMODL1Q5DID0 1318 aa12.39□□□□□ -0.43
MCF2L-231ENST00000494043 TEX33O43247 280 aa12.39□□□□□ -0.43
MCF2L-231ENST00000494043 CLTAP09496 248 aa12.39□□□□□ -0.43
MCF2L-231ENST00000494043 CLTBP09497 229 aa12.39□□□□□ -0.43
MCF2L-231ENST00000494043 TRIM49P0CI25 452 aa12.39□□□□□ -0.43
MCF2L-231ENST00000494043 TRIM49CP0CI26 452 aa12.39□□□□□ -0.43
MCF2L-231ENST00000494043 STAG3L1P0CL83 205 aa12.39□□□□□ -0.43
MCF2L-231ENST00000494043 GRM5P41594 1212 aa12.39□□□□□ -0.43
MCF2L-231ENST00000494043 OSTNP61366 133 aa12.39□□□□□ -0.43
MCF2L-231ENST00000494043 POU5F1Q01860 360 aaKnown RBP12.39□□□□□ -0.43
MCF2L-231ENST00000494043 UBXN1Q04323 297 aa12.39□□□□□ -0.43
MCF2L-231ENST00000494043 KCNH2Q12809 1159 aa12.39□□□□□ -0.43
MCF2L-231ENST00000494043 C1orf220Q5T0J3 134 aa12.39□□□□□ -0.43
MCF2L-231ENST00000494043 FKBP15Q5T1M5 1219 aa12.39□□□□□ -0.43
MCF2L-231ENST00000494043 TWF2Q6IBS0 349 aaKnown RBP12.39□□□□□ -0.43
MCF2L-231ENST00000494043 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.39□□□□□ -0.43
MCF2L-231ENST00000494043 USP37Q86T82 979 aa12.39□□□□□ -0.43
MCF2L-231ENST00000494043 PARD3BQ8TEW8 1205 aa12.39□□□□□ -0.43
MCF2L-231ENST00000494043 TRIM6Q9C030 488 aaPredicted RBP12.39□□□□□ -0.43
MCF2L-231ENST00000494043 TANC1Q9C0D5 1861 aa12.39□□□□□ -0.43
MCF2L-231ENST00000494043 LRRIQ3A6PVS8 624 aaPredicted RBP12.38□□□□□ -0.43
MCF2L-231ENST00000494043 RBAK-RBAKDNI3L0D1 243 aa12.38□□□□□ -0.43
MCF2L-231ENST00000494043 STX10O60499 249 aa12.38□□□□□ -0.43
MCF2L-231ENST00000494043 NBNO60934 754 aa12.38□□□□□ -0.43
MCF2L-231ENST00000494043 IL18RAPO95256 599 aa12.38□□□□□ -0.43
MCF2L-231ENST00000494043 CXCL8P10145 99 aa12.38□□□□□ -0.43
MCF2L-231ENST00000494043 PBX1P40424 430 aa12.38□□□□□ -0.43
MCF2L-231ENST00000494043 WNT7BP56706 349 aa12.38□□□□□ -0.43
MCF2L-231ENST00000494043 DLG4P78352 724 aa12.38□□□□□ -0.43
MCF2L-231ENST00000494043 DSC3Q14574 896 aa12.38□□□□□ -0.43
MCF2L-231ENST00000494043 ENOX2Q16206 610 aaKnown RBP12.38□□□□□ -0.43
MCF2L-231ENST00000494043 VSTM4Q8IW00 320 aa12.38□□□□□ -0.43
MCF2L-231ENST00000494043 TMEM192Q8IY95 271 aa12.38□□□□□ -0.43
MCF2L-231ENST00000494043 CCDC127Q96BQ5 260 aa12.38□□□□□ -0.43
MCF2L-231ENST00000494043 PDLIM2Q96JY6 352 aa12.38□□□□□ -0.43
MCF2L-231ENST00000494043 CCDC94Q9BW85 323 aaPredicted RBP12.38□□□□□ -0.43
MCF2L-231ENST00000494043 IFIH1Q9BYX4 1025 aaKnown RBP12.38□□□□□ -0.43
MCF2L-231ENST00000494043 PPP1R12CQ9BZL4 782 aa12.38□□□□□ -0.43
MCF2L-231ENST00000494043 WNT8AQ9H1J5 351 aa12.38□□□□□ -0.43
MCF2L-231ENST00000494043 TMX1Q9H3N1 280 aa12.38□□□□□ -0.43
MCF2L-231ENST00000494043 NXF3Q9H4D5 531 aaKnown RBP12.38□□□□□ -0.43
MCF2L-231ENST00000494043 RPF1Q9H9Y2 349 aaKnown RBP12.38□□□□□ -0.43
MCF2L-231ENST00000494043 PDE11AQ9HCR9 933 aa12.38□□□□□ -0.43
MCF2L-231ENST00000494043 TMEM39AQ9NV64 488 aa12.38□□□□□ -0.43
MCF2L-231ENST00000494043 A0A1W2PQC6 194 aa12.37□□□□□ -0.43
MCF2L-231ENST00000494043 MGEA5O60502 916 aa12.37□□□□□ -0.43
MCF2L-231ENST00000494043 N4BP1O75113 896 aaKnown RBP12.37□□□□□ -0.43
MCF2L-231ENST00000494043 PARNO95453 639 aaKnown RBP12.37□□□□□ -0.43
MCF2L-231ENST00000494043 DLATP10515 647 aaKnown RBP12.37□□□□□ -0.43
MCF2L-231ENST00000494043 ZSCAN20P17040 1043 aaPredicted RBP12.37□□□□□ -0.43
MCF2L-231ENST00000494043 GTF2H1P32780 548 aa12.37□□□□□ -0.43
MCF2L-231ENST00000494043 FMO5P49326 533 aa12.37□□□□□ -0.43
MCF2L-231ENST00000494043 CLDN10P78369 228 aa12.37□□□□□ -0.43
MCF2L-231ENST00000494043 MYL7Q01449 175 aa12.37□□□□□ -0.43
MCF2L-231ENST00000494043 PPP3CAQ08209 521 aa12.37□□□□□ -0.43
MCF2L-231ENST00000494043 GPNMBQ14956 572 aa12.37□□□□□ -0.43
MCF2L-231ENST00000494043 SURF1Q15526 300 aa12.37□□□□□ -0.43
MCF2L-231ENST00000494043 PTPN21Q16825 1174 aa12.37□□□□□ -0.43
MCF2L-231ENST00000494043 ACAP3Q96P50 834 aa12.37□□□□□ -0.43
MCF2L-231ENST00000494043 ERGIC2Q96RQ1 377 aa12.37□□□□□ -0.43
MCF2L-231ENST00000494043 FNBP1Q96RU3 617 aa12.37□□□□□ -0.43
MCF2L-231ENST00000494043 CGRRF1Q99675 332 aa12.37□□□□□ -0.43
MCF2L-231ENST00000494043 TRAIPQ9BWF2 469 aa12.37□□□□□ -0.43
MCF2L-231ENST00000494043 TOPORSQ9NS56 1045 aaPredicted RBP12.37□□□□□ -0.43
MCF2L-231ENST00000494043 IPPQ9Y573 584 aa12.37□□□□□ -0.43
MCF2L-231ENST00000494043 GTPBP10A4D1E9 387 aaKnown RBP12.36□□□□□ -0.43
MCF2L-231ENST00000494043 KIAA0355O15063 1070 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 PMM2O15305 246 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 MEFVO15553 781 aaPredicted RBP12.36□□□□□ -0.43
MCF2L-231ENST00000494043 CXCL10P02778 98 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 CYP2C18P33260 490 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 GCLMP48507 274 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 MXI1P50539 228 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 RAB27AP51159 221 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 CCL23P55773 120 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 CCDC173Q0VFZ6 552 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 SYCP1Q15431 976 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 CBWD6Q4V339 395 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 PLEKHG4Q58EX7 1191 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 CBWD3Q5JTY5 395 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 CBWD5Q5RIA9 395 aa12.36□□□□□ -0.43
MCF2L-231ENST00000494043 SPECC1LQ69YQ0 1117 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms