RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 POLD4Q9HCU8 107 aa17.36■□□□□ 0.37
SMPD4-220ENST00000491319 CHST7Q9NS84 486 aa17.36■□□□□ 0.37
SMPD4-220ENST00000491319 SNTG2Q9NY99 539 aa17.36■□□□□ 0.37
SMPD4-220ENST00000491319 NOL7Q9UMY1 257 aaKnown RBP17.36■□□□□ 0.37
SMPD4-220ENST00000491319 MYH15Q9Y2K3 1946 aa17.35■□□□□ 0.37
SMPD4-220ENST00000491319 CASTOR2A6NHX0 329 aa17.35■□□□□ 0.37
SMPD4-220ENST00000491319 PTGESO14684 152 aa17.35■□□□□ 0.37
SMPD4-220ENST00000491319 RFPL2O75678 378 aa17.35■□□□□ 0.37
SMPD4-220ENST00000491319 RECQL4O94761 1208 aa17.35■□□□□ 0.37
SMPD4-220ENST00000491319 SPATA31D3P0C874 917 aa17.35■□□□□ 0.37
SMPD4-220ENST00000491319 MUTP22033 750 aa17.35■□□□□ 0.37
SMPD4-220ENST00000491319 NAMPTP43490 491 aa17.35■□□□□ 0.37
SMPD4-220ENST00000491319 USP41Q3LFD5 358 aa17.35■□□□□ 0.37
SMPD4-220ENST00000491319 EEF1DP3Q658K8 133 aa17.35■□□□□ 0.37
SMPD4-220ENST00000491319 SPATA31D4Q6ZUB0 917 aa17.35■□□□□ 0.37
SMPD4-220ENST00000491319 OTOP3Q7RTS5 596 aa17.35■□□□□ 0.37
SMPD4-220ENST00000491319 CMASQ8NFW8 434 aaPredicted RBP17.35■□□□□ 0.37
SMPD4-220ENST00000491319 DEPTORQ8TB45 409 aa17.35■□□□□ 0.37
SMPD4-220ENST00000491319 HASPINQ8TF76 798 aa17.35■□□□□ 0.37
SMPD4-220ENST00000491319 RIN2Q8WYP3 895 aaPredicted RBP17.35■□□□□ 0.37
SMPD4-220ENST00000491319 ACSF2Q96CM8 615 aaPredicted RBP17.35■□□□□ 0.37
SMPD4-220ENST00000491319 PRRX2Q99811 253 aa17.35■□□□□ 0.37
SMPD4-220ENST00000491319 BHMT2Q9H2M3 363 aa17.35■□□□□ 0.37
SMPD4-220ENST00000491319 CCDC195A0A1B0GUA6 201 aa17.34■□□□□ 0.37
SMPD4-220ENST00000491319 N4BP1O75113 896 aaKnown RBP17.34■□□□□ 0.37
SMPD4-220ENST00000491319 RPL17P18621 184 aaKnown RBP17.34■□□□□ 0.37
SMPD4-220ENST00000491319 TOB1P50616 345 aaPredicted RBP17.34■□□□□ 0.37
SMPD4-220ENST00000491319 TUSC3Q13454 348 aa17.34■□□□□ 0.37
SMPD4-220ENST00000491319 HSP90AA2PQ14568 343 aaPredicted RBP17.34■□□□□ 0.37
SMPD4-220ENST00000491319 PPP2R5AQ15172 486 aa17.34■□□□□ 0.37
SMPD4-220ENST00000491319 PALB2Q86YC2 1186 aa17.34■□□□□ 0.37
SMPD4-220ENST00000491319 ADPGKQ9BRR6 497 aa17.34■□□□□ 0.37
SMPD4-220ENST00000491319 LRWD1Q9UFC0 647 aa17.34■□□□□ 0.37
SMPD4-220ENST00000491319 PCDHB6Q9Y5E3 794 aa17.34■□□□□ 0.37
SMPD4-220ENST00000491319 CLUHO75153 1309 aa17.33■□□□□ 0.36
SMPD4-220ENST00000491319 SF3B1O75533 1304 aaKnown RBP eCLIP17.33■□□□□ 0.36
SMPD4-220ENST00000491319 ACKR2O00590 384 aa17.33■□□□□ 0.36
SMPD4-220ENST00000491319 TGM5O43548 720 aa17.33■□□□□ 0.36
SMPD4-220ENST00000491319 TADA2AO75478 443 aa17.33■□□□□ 0.36
SMPD4-220ENST00000491319 KIF4AO95239 1232 aa17.33■□□□□ 0.36
SMPD4-220ENST00000491319 U2AF2P26368 475 aaKnown RBP eCLIP17.33■□□□□ 0.36
SMPD4-220ENST00000491319 PTGDRQ13258 359 aa17.33■□□□□ 0.36
SMPD4-220ENST00000491319 RTP2Q5QGT7 225 aa17.33■□□□□ 0.36
SMPD4-220ENST00000491319 ELMSAN1Q6PJG2 1045 aa17.33■□□□□ 0.36
SMPD4-220ENST00000491319 PRSS55Q6UWB4 352 aaPredicted RBP17.33■□□□□ 0.36
SMPD4-220ENST00000491319 SNX29Q8TEQ0 813 aa17.33■□□□□ 0.36
SMPD4-220ENST00000491319 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.33■□□□□ 0.36
SMPD4-220ENST00000491319 DDX19AQ9NUU7 478 aaKnown RBP17.33■□□□□ 0.36
SMPD4-220ENST00000491319 KIAA1024Q9UPX6 916 aa17.33■□□□□ 0.36
SMPD4-220ENST00000491319 NOTCH4Q99466 2003 aa17.32■□□□□ 0.36
SMPD4-220ENST00000491319 PP2D1A8MPX8 630 aa17.32■□□□□ 0.36
SMPD4-220ENST00000491319 THP07101 528 aa17.32■□□□□ 0.36
SMPD4-220ENST00000491319 NAB2Q15742 525 aa17.32■□□□□ 0.36
SMPD4-220ENST00000491319 TMEM105Q8N8V8 129 aa17.32■□□□□ 0.36
SMPD4-220ENST00000491319 IGSF22Q8N9C0 903 aa17.32■□□□□ 0.36
SMPD4-220ENST00000491319 SMG7Q92540 1137 aaKnown RBP17.32■□□□□ 0.36
SMPD4-220ENST00000491319 KIFAP3Q92845 792 aa17.32■□□□□ 0.36
SMPD4-220ENST00000491319 ZNF707Q96C28 371 aaPredicted RBP17.32■□□□□ 0.36
SMPD4-220ENST00000491319 IFT74Q96LB3 600 aa17.32■□□□□ 0.36
SMPD4-220ENST00000491319 WDR6Q9NNW5 1121 aaKnown RBP17.32■□□□□ 0.36
SMPD4-220ENST00000491319 FAM86C1Q9NVL1 165 aa17.32■□□□□ 0.36
SMPD4-220ENST00000491319 FNIP2Q9P278 1114 aa17.32■□□□□ 0.36
SMPD4-220ENST00000491319 DPP7Q9UHL4 492 aa17.32■□□□□ 0.36
SMPD4-220ENST00000491319 GDAQ9Y2T3 454 aa17.32■□□□□ 0.36
SMPD4-220ENST00000491319 DCAF4L1Q3SXM0 396 aa17.31■□□□□ 0.36
SMPD4-220ENST00000491319 GLRA4Q5JXX5 417 aa17.31■□□□□ 0.36
SMPD4-220ENST00000491319 NT5DC1Q5TFE4 455 aa17.31■□□□□ 0.36
SMPD4-220ENST00000491319 GPR65Q8IYL9 337 aa17.31■□□□□ 0.36
SMPD4-220ENST00000491319 RHOBTB2Q9BYZ6 727 aa17.31■□□□□ 0.36
SMPD4-220ENST00000491319 PLEKHA4Q9H4M7 779 aa17.31■□□□□ 0.36
SMPD4-220ENST00000491319 KCNK12Q9HB15 430 aa17.31■□□□□ 0.36
SMPD4-220ENST00000491319 E9PMD0 336 aa17.3■□□□□ 0.36
SMPD4-220ENST00000491319 PAPLNO95428 1278 aa17.3■□□□□ 0.36
SMPD4-220ENST00000491319 CDC25AP30304 524 aa17.3■□□□□ 0.36
SMPD4-220ENST00000491319 GBP2P32456 591 aaPredicted RBP17.3■□□□□ 0.36
SMPD4-220ENST00000491319 EFNA5P52803 228 aa17.3■□□□□ 0.36
SMPD4-220ENST00000491319 CREMQ03060 361 aa17.3■□□□□ 0.36
SMPD4-220ENST00000491319 TDGQ13569 410 aa17.3■□□□□ 0.36
SMPD4-220ENST00000491319 PDIA5Q14554 519 aa17.3■□□□□ 0.36
SMPD4-220ENST00000491319 IL17AQ16552 155 aa17.3■□□□□ 0.36
SMPD4-220ENST00000491319 ATF7IP2Q5U623 682 aa17.3■□□□□ 0.36
SMPD4-220ENST00000491319 FAM171A1Q5VUB5 890 aa17.3■□□□□ 0.36
SMPD4-220ENST00000491319 LILRA6Q6PI73 481 aa17.3■□□□□ 0.36
SMPD4-220ENST00000491319 CEP57Q86XR8 500 aa17.3■□□□□ 0.36
SMPD4-220ENST00000491319 HDAC7Q8WUI4 952 aa17.3■□□□□ 0.36
SMPD4-220ENST00000491319 STAMQ92783 540 aa17.3■□□□□ 0.36
SMPD4-220ENST00000491319 MYADMQ96S97 322 aa17.3■□□□□ 0.36
SMPD4-220ENST00000491319 TTPALQ9BTX7 342 aa17.3■□□□□ 0.36
SMPD4-220ENST00000491319 RAB34Q9BZG1 259 aa17.3■□□□□ 0.36
SMPD4-220ENST00000491319 NT5C3AQ9H0P0 336 aa17.3■□□□□ 0.36
SMPD4-220ENST00000491319 MFSD1Q9H3U5 465 aa17.3■□□□□ 0.36
SMPD4-220ENST00000491319 DUSP12Q9UNI6 340 aa17.3■□□□□ 0.36
SMPD4-220ENST00000491319 PHLPP2Q6ZVD8 1323 aa17.29■□□□□ 0.36
SMPD4-220ENST00000491319 C1RP00736 705 aa17.29■□□□□ 0.36
SMPD4-220ENST00000491319 PEX3P56589 373 aa17.29■□□□□ 0.36
SMPD4-220ENST00000491319 PSMD5Q16401 504 aa17.29■□□□□ 0.36
SMPD4-220ENST00000491319 CWF19L1Q69YN2 538 aaKnown RBP17.29■□□□□ 0.36
SMPD4-220ENST00000491319 CYP26C1Q6V0L0 522 aa17.29■□□□□ 0.36
SMPD4-220ENST00000491319 KCNK18Q7Z418 384 aa17.29■□□□□ 0.36
SMPD4-220ENST00000491319 DAW1Q8N136 415 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms