RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 PTENP60484 403 aa15.41■□□□□ 0.06
CUX1-209ENST00000487284 DLG4P78352 724 aa15.41■□□□□ 0.06
CUX1-209ENST00000487284 KIZQ2M2Z5 673 aa15.41■□□□□ 0.06
CUX1-209ENST00000487284 TRIM65Q6PJ69 517 aa15.41■□□□□ 0.06
CUX1-209ENST00000487284 CBWD2Q8IUF1 395 aa15.41■□□□□ 0.06
CUX1-209ENST00000487284 GPD1LQ8N335 351 aa15.41■□□□□ 0.06
CUX1-209ENST00000487284 ACRBPQ8NEB7 543 aa15.41■□□□□ 0.06
CUX1-209ENST00000487284 TMC2Q8TDI7 906 aa15.41■□□□□ 0.06
CUX1-209ENST00000487284 MFSD14AQ96MC6 490 aa15.41■□□□□ 0.06
CUX1-209ENST00000487284 FDXACB1Q9BRP7 624 aaPredicted RBP15.41■□□□□ 0.06
CUX1-209ENST00000487284 CCDC113Q9H0I3 377 aa15.41■□□□□ 0.06
CUX1-209ENST00000487284 MINDY3Q9H8M7 445 aa15.41■□□□□ 0.06
CUX1-209ENST00000487284 NHEJ1Q9H9Q4 299 aaPredicted RBP15.41■□□□□ 0.06
CUX1-209ENST00000487284 IFT122Q9HBG6 1241 aa15.41■□□□□ 0.06
CUX1-209ENST00000487284 ARHGAP20Q9P2F6 1191 aa15.41■□□□□ 0.06
CUX1-209ENST00000487284 GINS2Q9Y248 185 aa15.41■□□□□ 0.06
CUX1-209ENST00000487284 REXO2Q9Y3B8 237 aaKnown RBP15.41■□□□□ 0.06
CUX1-209ENST00000487284 DAAM1Q9Y4D1 1078 aa15.41■□□□□ 0.06
CUX1-209ENST00000487284 GOLGA8IPA6NC78 632 aa15.4■□□□□ 0.06
CUX1-209ENST00000487284 GOLGA8JA6NMD2 632 aa15.4■□□□□ 0.06
CUX1-209ENST00000487284 EIF3CLB5ME19 914 aaKnown RBP15.4■□□□□ 0.06
CUX1-209ENST00000487284 GPR32O75388 356 aa15.4■□□□□ 0.06
CUX1-209ENST00000487284 EDN1P05305 212 aa15.4■□□□□ 0.06
CUX1-209ENST00000487284 PHKA2P46019 1235 aa15.4■□□□□ 0.06
CUX1-209ENST00000487284 ETF1P62495 437 aaKnown RBP15.4■□□□□ 0.06
CUX1-209ENST00000487284 SFMBT2Q5VUG0 894 aa15.4■□□□□ 0.06
CUX1-209ENST00000487284 HGSNATQ68CP4 663 aa15.4■□□□□ 0.06
CUX1-209ENST00000487284 ZPBP2Q6X784 338 aa15.4■□□□□ 0.06
CUX1-209ENST00000487284 ZBTB8OSQ8IWT0 167 aa15.4■□□□□ 0.06
CUX1-209ENST00000487284 NLRP7Q8WX94 980 aa15.4■□□□□ 0.06
CUX1-209ENST00000487284 SAAL1Q96ER3 474 aa15.4■□□□□ 0.06
CUX1-209ENST00000487284 PAWRQ96IZ0 340 aaKnown RBP15.4■□□□□ 0.06
CUX1-209ENST00000487284 PRIMPOLQ96LW4 560 aa15.4■□□□□ 0.06
CUX1-209ENST00000487284 SCLT1Q96NL6 688 aa15.4■□□□□ 0.06
CUX1-209ENST00000487284 EIF3CQ99613 913 aaKnown RBP15.4■□□□□ 0.06
CUX1-209ENST00000487284 CDHR5Q9HBB8 845 aa15.4■□□□□ 0.06
CUX1-209ENST00000487284 KIAA1586Q9HCI6 787 aa15.4■□□□□ 0.06
CUX1-209ENST00000487284 AIPL1Q9NZN9 384 aa15.4■□□□□ 0.06
CUX1-209ENST00000487284 R3HCC1Q9Y3T6 440 aaKnown RBP15.4■□□□□ 0.06
CUX1-209ENST00000487284 FHOD1Q9Y613 1164 aa15.4■□□□□ 0.06
CUX1-209ENST00000487284 MKI67P46013 3256 aaKnown RBP15.39■□□□□ 0.05
CUX1-209ENST00000487284 RBAK-RBAKDNI3L0D1 243 aa15.39■□□□□ 0.05
CUX1-209ENST00000487284 CSDE1O75534 798 aaKnown RBP15.39■□□□□ 0.05
CUX1-209ENST00000487284 CTSHP09668 335 aa15.39■□□□□ 0.05
CUX1-209ENST00000487284 TERF1P54274 439 aa15.39■□□□□ 0.05
CUX1-209ENST00000487284 POU5F1BQ06416 359 aa15.39■□□□□ 0.05
CUX1-209ENST00000487284 PPP3CAQ08209 521 aa15.39■□□□□ 0.05
CUX1-209ENST00000487284 PTK7Q13308 1070 aa15.39■□□□□ 0.05
CUX1-209ENST00000487284 MAPK8IP2Q13387 824 aaPredicted RBP15.39■□□□□ 0.05
CUX1-209ENST00000487284 HSP90AA2PQ14568 343 aaPredicted RBP15.39■□□□□ 0.05
CUX1-209ENST00000487284 SLFN12LQ6IEE8 588 aa15.39■□□□□ 0.05
CUX1-209ENST00000487284 SLC39A5Q6ZMH5 540 aa15.39■□□□□ 0.05
CUX1-209ENST00000487284 ZNF410Q86VK4 478 aa15.39■□□□□ 0.05
CUX1-209ENST00000487284 IFNLR1Q8IU57 520 aaPredicted RBP15.39■□□□□ 0.05
CUX1-209ENST00000487284 FAM126BQ8IXS8 530 aa15.39■□□□□ 0.05
CUX1-209ENST00000487284 NME8Q8N427 588 aa15.39■□□□□ 0.05
CUX1-209ENST00000487284 PARD3BQ8TEW8 1205 aa15.39■□□□□ 0.05
CUX1-209ENST00000487284 DHX38Q92620 1227 aaKnown RBP15.39■□□□□ 0.05
CUX1-209ENST00000487284 OSMRQ99650 979 aa15.39■□□□□ 0.05
CUX1-209ENST00000487284 SEZ6LQ9BYH1 1024 aa15.39■□□□□ 0.05
CUX1-209ENST00000487284 NFKBIZQ9BYH8 718 aa15.39■□□□□ 0.05
CUX1-209ENST00000487284 C2orf40Q9H1Z8 148 aa15.39■□□□□ 0.05
CUX1-209ENST00000487284 ADAMTS10Q9H324 1103 aa15.39■□□□□ 0.05
CUX1-209ENST00000487284 USP20Q9Y2K6 914 aa15.39■□□□□ 0.05
CUX1-209ENST00000487284 SSU72P8A0A1W2PR75 194 aa15.38■□□□□ 0.05
CUX1-209ENST00000487284 EXTL3O43909 919 aa15.38■□□□□ 0.05
CUX1-209ENST00000487284 LCA5LO95447 670 aa15.38■□□□□ 0.05
CUX1-209ENST00000487284 SERPING1P05155 500 aa15.38■□□□□ 0.05
CUX1-209ENST00000487284 PLEKP08567 350 aaPredicted RBP15.38■□□□□ 0.05
CUX1-209ENST00000487284 JAM2P57087 298 aa15.38■□□□□ 0.05
CUX1-209ENST00000487284 MRPS6P82932 125 aaKnown RBP15.38■□□□□ 0.05
CUX1-209ENST00000487284 MBTD1Q05BQ5 628 aa15.38■□□□□ 0.05
CUX1-209ENST00000487284 CYP24A1Q07973 514 aa15.38■□□□□ 0.05
CUX1-209ENST00000487284 RAPGEF1Q13905 1077 aa15.38■□□□□ 0.05
CUX1-209ENST00000487284 EPC2Q52LR7 807 aa15.38■□□□□ 0.05
CUX1-209ENST00000487284 ZNF662Q6ZS27 426 aa15.38■□□□□ 0.05
CUX1-209ENST00000487284 RSPH3Q86UC2 560 aa15.38■□□□□ 0.05
CUX1-209ENST00000487284 LMO3Q8TAP4 145 aa15.38■□□□□ 0.05
CUX1-209ENST00000487284 TARS2Q9BW92 718 aaKnown RBP15.38■□□□□ 0.05
CUX1-209ENST00000487284 INTS2Q9H0H0 1204 aaKnown RBP15.38■□□□□ 0.05
CUX1-209ENST00000487284 PAXBP1Q9Y5B6 917 aa15.38■□□□□ 0.05
CUX1-209ENST00000487284 A0A0B4J269 797 aa15.37■□□□□ 0.05
CUX1-209ENST00000487284 A0A0U1RQJ8 604 aa15.37■□□□□ 0.05
CUX1-209ENST00000487284 INO80B-WBP1J3KQ70 363 aa15.37■□□□□ 0.05
CUX1-209ENST00000487284 PQBP1O60828 265 aaKnown RBP15.37■□□□□ 0.05
CUX1-209ENST00000487284 PRKCBP05771 671 aa15.37■□□□□ 0.05
CUX1-209ENST00000487284 IQCF3P0C7M6 154 aa15.37■□□□□ 0.05
CUX1-209ENST00000487284 RFX1P22670 979 aa15.37■□□□□ 0.05
CUX1-209ENST00000487284 EIF4A3P38919 411 aaKnown RBP15.37■□□□□ 0.05
CUX1-209ENST00000487284 THPOP40225 353 aa15.37■□□□□ 0.05
CUX1-209ENST00000487284 ARHGAP25P42331 645 aa15.37■□□□□ 0.05
CUX1-209ENST00000487284 KRT83P78385 493 aa15.37■□□□□ 0.05
CUX1-209ENST00000487284 CDC42EP1Q00587 391 aa15.37■□□□□ 0.05
CUX1-209ENST00000487284 TRIM71Q2Q1W2 868 aaKnown RBP15.37■□□□□ 0.05
CUX1-209ENST00000487284 ASTE1Q2TB18 679 aaPredicted RBP15.37■□□□□ 0.05
CUX1-209ENST00000487284 USP37Q86T82 979 aa15.37■□□□□ 0.05
CUX1-209ENST00000487284 RPAINQ86UA6 219 aa15.37■□□□□ 0.05
CUX1-209ENST00000487284 EHBP1Q8NDI1 1231 aa15.37■□□□□ 0.05
CUX1-209ENST00000487284 KIF18AQ8NI77 898 aa15.37■□□□□ 0.05
CUX1-209ENST00000487284 TMEM40Q8WWA1 233 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms