RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 ERCC4Q92889 916 aaPredicted RBP18.69■□□□□ 0.58
VIM-205ENST00000485947 TCF25Q9BQ70 676 aa18.69■□□□□ 0.58
VIM-205ENST00000485947 IGFLR1Q9H665 355 aa18.69■□□□□ 0.58
VIM-205ENST00000485947 HCSTQ9UBK5 93 aa18.69■□□□□ 0.58
VIM-205ENST00000485947 CD207Q9UJ71 328 aa18.69■□□□□ 0.58
VIM-205ENST00000485947 IRAK3Q9Y616 596 aa18.69■□□□□ 0.58
VIM-205ENST00000485947 PHLPP2Q6ZVD8 1323 aa18.69■□□□□ 0.58
VIM-205ENST00000485947 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.68■□□□□ 0.58
VIM-205ENST00000485947 ITGA4P13612 1032 aa18.68■□□□□ 0.58
VIM-205ENST00000485947 NDUFV1P49821 464 aa18.68■□□□□ 0.58
VIM-205ENST00000485947 EFNA5P52803 228 aa18.68■□□□□ 0.58
VIM-205ENST00000485947 SLC12A3P55017 1021 aa18.68■□□□□ 0.58
VIM-205ENST00000485947 SMC1AQ14683 1233 aaKnown RBP18.68■□□□□ 0.58
VIM-205ENST00000485947 SMAD2Q15796 467 aaKnown RBP18.68■□□□□ 0.58
VIM-205ENST00000485947 SLC27A1Q6PCB7 646 aa18.68■□□□□ 0.58
VIM-205ENST00000485947 DDX53Q86TM3 631 aaKnown RBP18.68■□□□□ 0.58
VIM-205ENST00000485947 LPPQ93052 612 aa18.68■□□□□ 0.58
VIM-205ENST00000485947 MSLNLQ96KJ4 702 aa18.68■□□□□ 0.58
VIM-205ENST00000485947 POP1Q99575 1024 aaKnown RBP18.68■□□□□ 0.58
VIM-205ENST00000485947 TRIM6Q9C030 488 aaPredicted RBP18.68■□□□□ 0.58
VIM-205ENST00000485947 BLZF1Q9H2G9 400 aa18.68■□□□□ 0.58
VIM-205ENST00000485947 FZD8Q9H461 694 aa18.68■□□□□ 0.58
VIM-205ENST00000485947 NRDE2Q9H7Z3 1164 aa18.68■□□□□ 0.58
VIM-205ENST00000485947 ENTPD7Q9NQZ7 604 aa18.68■□□□□ 0.58
VIM-205ENST00000485947 KCND2Q9NZV8 630 aa18.68■□□□□ 0.58
VIM-205ENST00000485947 MAN1B1Q9UKM7 699 aa18.68■□□□□ 0.58
VIM-205ENST00000485947 GIT1Q9Y2X7 761 aa18.68■□□□□ 0.58
VIM-205ENST00000485947 IPPQ9Y573 584 aa18.68■□□□□ 0.58
VIM-205ENST00000485947 PVALEFA0A1B0GWK0 134 aa18.67■□□□□ 0.58
VIM-205ENST00000485947 LRRIQ4A6NIV6 560 aa18.67■□□□□ 0.58
VIM-205ENST00000485947 GPR37L1O60883 481 aa18.67■□□□□ 0.58
VIM-205ENST00000485947 ZC3H11AO75152 810 aaKnown RBP eCLIP18.67■□□□□ 0.58
VIM-205ENST00000485947 TBX10O75333 385 aa18.67■□□□□ 0.58
VIM-205ENST00000485947 RPN1P04843 607 aaKnown RBP18.67■□□□□ 0.58
VIM-205ENST00000485947 ALDH2P05091 517 aa18.67■□□□□ 0.58
VIM-205ENST00000485947 GALTP07902 379 aa18.67■□□□□ 0.58
VIM-205ENST00000485947 ARF4P18085 180 aaPredicted RBP18.67■□□□□ 0.58
VIM-205ENST00000485947 MORC3Q14149 939 aa18.67■□□□□ 0.58
VIM-205ENST00000485947 DHX8Q14562 1220 aaKnown RBP18.67■□□□□ 0.58
VIM-205ENST00000485947 TMC7Q7Z402 723 aa18.67■□□□□ 0.58
VIM-205ENST00000485947 ADGRD2Q7Z7M1 963 aa18.67■□□□□ 0.58
VIM-205ENST00000485947 ALYREFQ86V81 257 aaKnown RBP18.67■□□□□ 0.58
VIM-205ENST00000485947 GPBP1Q86WP2 473 aa18.67■□□□□ 0.58
VIM-205ENST00000485947 GJD3Q8N144 294 aa18.67■□□□□ 0.58
VIM-205ENST00000485947 MRPL43Q8N983 215 aaKnown RBP18.67■□□□□ 0.58
VIM-205ENST00000485947 SMG8Q8ND04 991 aaKnown RBP18.67■□□□□ 0.58
VIM-205ENST00000485947 IGSF21Q96ID5 467 aa18.67■□□□□ 0.58
VIM-205ENST00000485947 IFT74Q96LB3 600 aa18.67■□□□□ 0.58
VIM-205ENST00000485947 FAM193BQ96PV7 902 aaPredicted RBP18.67■□□□□ 0.58
VIM-205ENST00000485947 TIPINQ9BVW5 301 aa18.67■□□□□ 0.58
VIM-205ENST00000485947 BHMT2Q9H2M3 363 aa18.67■□□□□ 0.58
VIM-205ENST00000485947 C17orf75Q9HAS0 396 aa18.67■□□□□ 0.58
VIM-205ENST00000485947 MYMKA6NI61 221 aa18.66■□□□□ 0.58
VIM-205ENST00000485947 MBTPS2O43462 519 aa18.66■□□□□ 0.58
VIM-205ENST00000485947 SSBP05455 408 aaKnown RBP eCLIP18.66■□□□□ 0.58
VIM-205ENST00000485947 IL9P15248 144 aa18.66■□□□□ 0.58
VIM-205ENST00000485947 HOXB8P17481 243 aaPredicted RBP18.66■□□□□ 0.58
VIM-205ENST00000485947 ASIC1P78348 528 aa18.66■□□□□ 0.58
VIM-205ENST00000485947 KCNC3Q14003 757 aa18.66■□□□□ 0.58
VIM-205ENST00000485947 MAPK6Q16659 721 aa18.66■□□□□ 0.58
VIM-205ENST00000485947 UNC13DQ70J99 1090 aa18.66■□□□□ 0.58
VIM-205ENST00000485947 GAS2L3Q86XJ1 694 aa18.66■□□□□ 0.58
VIM-205ENST00000485947 ADHFE1Q8IWW8 467 aa18.66■□□□□ 0.58
VIM-205ENST00000485947 SMRP1Q8NCR6 262 aa18.66■□□□□ 0.58
VIM-205ENST00000485947 DDX12PQ92771 950 aa18.66■□□□□ 0.58
VIM-205ENST00000485947 GPRC5CQ9NQ84 441 aa18.66■□□□□ 0.58
VIM-205ENST00000485947 CLEC1BQ9P126 229 aa18.66■□□□□ 0.58
VIM-205ENST00000485947 DACH1Q9UI36 760 aa18.66■□□□□ 0.58
VIM-205ENST00000485947 INPP5FQ9Y2H2 1132 aa18.66■□□□□ 0.58
VIM-205ENST00000485947 A0A087WWV3 80 aa18.65■□□□□ 0.58
VIM-205ENST00000485947 MEIS3P2A8K0S8 358 aa18.65■□□□□ 0.58
VIM-205ENST00000485947 BIN1O00499 593 aa18.65■□□□□ 0.58
VIM-205ENST00000485947 ACKR2O00590 384 aa18.65■□□□□ 0.58
VIM-205ENST00000485947 KLRC4O43908 158 aa18.65■□□□□ 0.58
VIM-205ENST00000485947 RHOBTB3O94955 611 aa18.65■□□□□ 0.58
VIM-205ENST00000485947 CASP1P29466 404 aa18.65■□□□□ 0.58
VIM-205ENST00000485947 GTF2F1P35269 517 aaKnown RBP eCLIP18.65■□□□□ 0.58
VIM-205ENST00000485947 DLX2Q07687 328 aaPredicted RBP18.65■□□□□ 0.58
VIM-205ENST00000485947 CT47A1Q5JQC4 288 aaPredicted RBP18.65■□□□□ 0.58
VIM-205ENST00000485947 APBB1IPQ7Z5R6 666 aaPredicted RBP18.65■□□□□ 0.58
VIM-205ENST00000485947 RBM23Q86U06 439 aaKnown RBP18.65■□□□□ 0.58
VIM-205ENST00000485947 DEPTORQ8TB45 409 aa18.65■□□□□ 0.58
VIM-205ENST00000485947 KHSRPQ92945 711 aaKnown RBP eCLIP18.65■□□□□ 0.58
VIM-205ENST00000485947 NAT10Q9H0A0 1025 aaKnown RBP18.65■□□□□ 0.58
VIM-205ENST00000485947 PLXNA4Q9HCM2 1894 aa18.65■□□□□ 0.58
VIM-205ENST00000485947 GOLGA6L3A6NEY3 463 aa18.64■□□□□ 0.57
VIM-205ENST00000485947 C19orf67A6NJJ6 358 aa18.64■□□□□ 0.57
VIM-205ENST00000485947 N4BP3O15049 544 aa18.64■□□□□ 0.57
VIM-205ENST00000485947 LINC01565O15544 149 aa18.64■□□□□ 0.57
VIM-205ENST00000485947 CTSAP10619 480 aa18.64■□□□□ 0.57
VIM-205ENST00000485947 PBX3P40426 434 aa18.64■□□□□ 0.57
VIM-205ENST00000485947 ANO6Q4KMQ2 910 aa18.64■□□□□ 0.57
VIM-205ENST00000485947 PLPP4Q5VZY2 271 aa18.64■□□□□ 0.57
VIM-205ENST00000485947 MAEAQ7L5Y9 396 aa18.64■□□□□ 0.57
VIM-205ENST00000485947 MLKLQ8NB16 471 aa18.64■□□□□ 0.57
VIM-205ENST00000485947 CASP10Q92851 521 aa18.64■□□□□ 0.57
VIM-205ENST00000485947 DNAJC19Q96DA6 116 aa18.64■□□□□ 0.57
VIM-205ENST00000485947 CPB2Q96IY4 423 aa18.64■□□□□ 0.57
VIM-205ENST00000485947 ADPGKQ9BRR6 497 aa18.64■□□□□ 0.57
VIM-205ENST00000485947 EIF2AQ9BY44 585 aaKnown RBP18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms