RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 EXOC8Q8IYI6 725 aa15.37■□□□□ 0.05
SQSTM1-208ENST00000485412 SLFN12Q8IYM2 578 aa15.37■□□□□ 0.05
SQSTM1-208ENST00000485412 NSUN7Q8NE18 718 aaKnown RBP15.37■□□□□ 0.05
SQSTM1-208ENST00000485412 HDAC7Q8WUI4 952 aa15.37■□□□□ 0.05
SQSTM1-208ENST00000485412 POLR3FQ9H1D9 316 aaPredicted RBP15.37■□□□□ 0.05
SQSTM1-208ENST00000485412 TMEM60Q9H2L4 133 aa15.37■□□□□ 0.05
SQSTM1-208ENST00000485412 PLEKHA4Q9H4M7 779 aa15.37■□□□□ 0.05
SQSTM1-208ENST00000485412 TTC12Q9H892 705 aaPredicted RBP15.37■□□□□ 0.05
SQSTM1-208ENST00000485412 RXFP1Q9HBX9 757 aa15.37■□□□□ 0.05
SQSTM1-208ENST00000485412 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.37■□□□□ 0.05
SQSTM1-208ENST00000485412 PCDHA12Q9UN75 941 aa15.37■□□□□ 0.05
SQSTM1-208ENST00000485412 FRYLO94915 3013 aa15.36■□□□□ 0.05
SQSTM1-208ENST00000485412 CACNA1IQ9P0X4 2223 aa15.36■□□□□ 0.05
SQSTM1-208ENST00000485412 NOTCH4Q99466 2003 aa15.36■□□□□ 0.05
SQSTM1-208ENST00000485412 USO1O60763 962 aaKnown RBP15.36■□□□□ 0.05
SQSTM1-208ENST00000485412 LYPLA2O95372 231 aa15.36■□□□□ 0.05
SQSTM1-208ENST00000485412 EDN1P05305 212 aa15.36■□□□□ 0.05
SQSTM1-208ENST00000485412 LAMP2P13473 410 aa15.36■□□□□ 0.05
SQSTM1-208ENST00000485412 XBP1P17861 261 aa15.36■□□□□ 0.05
SQSTM1-208ENST00000485412 AXLP30530 894 aa15.36■□□□□ 0.05
SQSTM1-208ENST00000485412 TXKP42681 527 aa15.36■□□□□ 0.05
SQSTM1-208ENST00000485412 DSG1Q02413 1049 aa15.36■□□□□ 0.05
SQSTM1-208ENST00000485412 MXD4Q14582 209 aaPredicted RBP15.36■□□□□ 0.05
SQSTM1-208ENST00000485412 FUT10Q6P4F1 479 aa15.36■□□□□ 0.05
SQSTM1-208ENST00000485412 HASPINQ8TF76 798 aa15.36■□□□□ 0.05
SQSTM1-208ENST00000485412 RUBCNQ92622 972 aa15.36■□□□□ 0.05
SQSTM1-208ENST00000485412 GTF3C6Q969F1 213 aa15.36■□□□□ 0.05
SQSTM1-208ENST00000485412 MTMR9Q96QG7 549 aa15.36■□□□□ 0.05
SQSTM1-208ENST00000485412 COLEC11Q9BWP8 271 aa15.36■□□□□ 0.05
SQSTM1-208ENST00000485412 NT5C3AQ9H0P0 336 aa15.36■□□□□ 0.05
SQSTM1-208ENST00000485412 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.36■□□□□ 0.05
SQSTM1-208ENST00000485412 CHST7Q9NS84 486 aa15.36■□□□□ 0.05
SQSTM1-208ENST00000485412 OTOGLQ3ZCN5 2332 aa15.35■□□□□ 0.05
SQSTM1-208ENST00000485412 DNAH14Q0VDD8 3507 aa15.35■□□□□ 0.05
SQSTM1-208ENST00000485412 TGM5O43548 720 aa15.35■□□□□ 0.05
SQSTM1-208ENST00000485412 DGAT1O75907 488 aa15.35■□□□□ 0.05
SQSTM1-208ENST00000485412 BAG4O95429 457 aaKnown RBP15.35■□□□□ 0.05
SQSTM1-208ENST00000485412 SPATA31C1P0DKV0 1188 aa15.35■□□□□ 0.05
SQSTM1-208ENST00000485412 IGFBP6P24592 240 aaPredicted RBP15.35■□□□□ 0.05
SQSTM1-208ENST00000485412 HTR4Q13639 388 aa15.35■□□□□ 0.05
SQSTM1-208ENST00000485412 PRSS55Q6UWB4 352 aaPredicted RBP15.35■□□□□ 0.05
SQSTM1-208ENST00000485412 DIS3L2Q8IYB7 885 aaKnown RBP15.35■□□□□ 0.05
SQSTM1-208ENST00000485412 PJA1Q8NG27 643 aa15.35■□□□□ 0.05
SQSTM1-208ENST00000485412 BSNDQ8WZ55 320 aa15.35■□□□□ 0.05
SQSTM1-208ENST00000485412 CCDC51Q96ER9 411 aa15.35■□□□□ 0.05
SQSTM1-208ENST00000485412 NAP1L4Q99733 375 aaKnown RBP15.35■□□□□ 0.05
SQSTM1-208ENST00000485412 PRKD2Q9BZL6 878 aa15.35■□□□□ 0.05
SQSTM1-208ENST00000485412 FOXQ1Q9C009 403 aa15.35■□□□□ 0.05
SQSTM1-208ENST00000485412 SLC2A4RGQ9NR83 387 aa15.35■□□□□ 0.05
SQSTM1-208ENST00000485412 ANKEF1Q9NU02 776 aa15.35■□□□□ 0.05
SQSTM1-208ENST00000485412 ZDHHC7Q9NXF8 308 aa15.35■□□□□ 0.05
SQSTM1-208ENST00000485412 DLGAP2Q9P1A6 1054 aa15.35■□□□□ 0.05
SQSTM1-208ENST00000485412 GIT1Q9Y2X7 761 aa15.35■□□□□ 0.05
SQSTM1-208ENST00000485412 NUMBLQ9Y6R0 609 aa15.35■□□□□ 0.05
SQSTM1-208ENST00000485412 ANHXE9PGG2 379 aa15.34■□□□□ 0.05
SQSTM1-208ENST00000485412 NEMFO60524 1076 aa15.34■□□□□ 0.05
SQSTM1-208ENST00000485412 KINO60870 393 aaKnown RBP15.34■□□□□ 0.05
SQSTM1-208ENST00000485412 MED24O75448 989 aa15.34■□□□□ 0.05
SQSTM1-208ENST00000485412 POU5F1BQ06416 359 aa15.34■□□□□ 0.05
SQSTM1-208ENST00000485412 NCBP1Q09161 790 aaKnown RBP15.34■□□□□ 0.05
SQSTM1-208ENST00000485412 TFDP1Q14186 410 aa15.34■□□□□ 0.05
SQSTM1-208ENST00000485412 USP41Q3LFD5 358 aa15.34■□□□□ 0.05
SQSTM1-208ENST00000485412 RTP2Q5QGT7 225 aa15.34■□□□□ 0.05
SQSTM1-208ENST00000485412 HACE1Q8IYU2 909 aa15.34■□□□□ 0.05
SQSTM1-208ENST00000485412 DCLK2Q8N568 766 aa15.34■□□□□ 0.05
SQSTM1-208ENST00000485412 SHDQ96IW2 340 aa15.34■□□□□ 0.05
SQSTM1-208ENST00000485412 NFKBIZQ9BYH8 718 aa15.34■□□□□ 0.05
SQSTM1-208ENST00000485412 TRIM6Q9C030 488 aaPredicted RBP15.34■□□□□ 0.05
SQSTM1-208ENST00000485412 PARP2Q9UGN5 583 aa15.34■□□□□ 0.05
SQSTM1-208ENST00000485412 CEP250Q9BV73 2442 aa15.34■□□□□ 0.05
SQSTM1-208ENST00000485412 A0A1B0GUA9 196 aa15.33■□□□□ 0.04
SQSTM1-208ENST00000485412 CASTOR2A6NHX0 329 aa15.33■□□□□ 0.04
SQSTM1-208ENST00000485412 LRRIQ4A6NIV6 560 aa15.33■□□□□ 0.04
SQSTM1-208ENST00000485412 ADAM12O43184 909 aa15.33■□□□□ 0.04
SQSTM1-208ENST00000485412 C1RP00736 705 aa15.33■□□□□ 0.04
SQSTM1-208ENST00000485412 ATP2B1P20020 1258 aa15.33■□□□□ 0.04
SQSTM1-208ENST00000485412 FSHRP23945 695 aa15.33■□□□□ 0.04
SQSTM1-208ENST00000485412 GUCY1B3Q02153 619 aa15.33■□□□□ 0.04
SQSTM1-208ENST00000485412 CREMQ03060 361 aa15.33■□□□□ 0.04
SQSTM1-208ENST00000485412 SLC27A1Q6PCB7 646 aa15.33■□□□□ 0.04
SQSTM1-208ENST00000485412 LILRA6Q6PI73 481 aa15.33■□□□□ 0.04
SQSTM1-208ENST00000485412 CATSPER3Q86XQ3 398 aa15.33■□□□□ 0.04
SQSTM1-208ENST00000485412 POLD4Q9HCU8 107 aa15.33■□□□□ 0.04
SQSTM1-208ENST00000485412 FNIP2Q9P278 1114 aa15.33■□□□□ 0.04
SQSTM1-208ENST00000485412 ADAM28Q9UKQ2 775 aa15.33■□□□□ 0.04
SQSTM1-208ENST00000485412 ZFP37Q9Y6Q3 630 aaPredicted RBP15.33■□□□□ 0.04
SQSTM1-208ENST00000485412 PATJQ8NI35 1801 aa15.33■□□□□ 0.04
SQSTM1-208ENST00000485412 PTGESO14684 152 aa15.32■□□□□ 0.04
SQSTM1-208ENST00000485412 ZMYND10O75800 440 aa15.32■□□□□ 0.04
SQSTM1-208ENST00000485412 KIF4AO95239 1232 aa15.32■□□□□ 0.04
SQSTM1-208ENST00000485412 PAPLNO95428 1278 aa15.32■□□□□ 0.04
SQSTM1-208ENST00000485412 GLULP15104 373 aa15.32■□□□□ 0.04
SQSTM1-208ENST00000485412 MCM7P33993 719 aa15.32■□□□□ 0.04
SQSTM1-208ENST00000485412 STARD6P59095 220 aa15.32■□□□□ 0.04
SQSTM1-208ENST00000485412 NTHL1P78549 312 aa15.32■□□□□ 0.04
SQSTM1-208ENST00000485412 GRIK3Q13003 919 aa15.32■□□□□ 0.04
SQSTM1-208ENST00000485412 PCBP1Q15365 356 aaKnown RBP eCLIP15.32■□□□□ 0.04
SQSTM1-208ENST00000485412 NAB2Q15742 525 aa15.32■□□□□ 0.04
SQSTM1-208ENST00000485412 EEF1DP3Q658K8 133 aa15.32■□□□□ 0.04
SQSTM1-208ENST00000485412 WASF1Q92558 559 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms