RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 SSX2IPQ9Y2D8 614 aa23.8■■□□□ 1.4
USP40-215ENST00000484528 ZMYM2Q9UBW7 1377 aa23.79■■□□□ 1.4
USP40-215ENST00000484528 DOCK6Q96HP0 2047 aa23.79■■□□□ 1.4
USP40-215ENST00000484528 DOCK8Q8NF50 2099 aa23.79■■□□□ 1.4
USP40-215ENST00000484528 VWA8A3KMH1 1905 aa23.79■■□□□ 1.4
USP40-215ENST00000484528 CASTOR2A6NHX0 329 aa23.79■■□□□ 1.4
USP40-215ENST00000484528 RECQL4O94761 1208 aa23.79■■□□□ 1.4
USP40-215ENST00000484528 GLUD1P00367 558 aa23.79■■□□□ 1.4
USP40-215ENST00000484528 MUTP22033 750 aa23.79■■□□□ 1.4
USP40-215ENST00000484528 ZDHHC14Q8IZN3 488 aa23.79■■□□□ 1.4
USP40-215ENST00000484528 RIN2Q8WYP3 895 aaPredicted RBP23.79■■□□□ 1.4
USP40-215ENST00000484528 RXFP1Q9HBX9 757 aa23.79■■□□□ 1.4
USP40-215ENST00000484528 MYH11P35749 1972 aa23.79■■□□□ 1.4
USP40-215ENST00000484528 ACKR2O00590 384 aa23.78■■□□□ 1.4
USP40-215ENST00000484528 PTGESO14684 152 aa23.78■■□□□ 1.4
USP40-215ENST00000484528 RFPL2O75678 378 aa23.78■■□□□ 1.4
USP40-215ENST00000484528 RPL17P18621 184 aaKnown RBP23.78■■□□□ 1.4
USP40-215ENST00000484528 TUSC3Q13454 348 aa23.78■■□□□ 1.4
USP40-215ENST00000484528 HSP90AA2PQ14568 343 aaPredicted RBP23.78■■□□□ 1.4
USP40-215ENST00000484528 PPP2R5AQ15172 486 aa23.78■■□□□ 1.4
USP40-215ENST00000484528 PALB2Q86YC2 1186 aa23.78■■□□□ 1.4
USP40-215ENST00000484528 IFT74Q96LB3 600 aa23.78■■□□□ 1.4
USP40-215ENST00000484528 ADPGKQ9BRR6 497 aa23.78■■□□□ 1.4
USP40-215ENST00000484528 CHST7Q9NS84 486 aa23.78■■□□□ 1.4
USP40-215ENST00000484528 USTQ9Y2C2 406 aa23.78■■□□□ 1.4
USP40-215ENST00000484528 GDAQ9Y2T3 454 aa23.78■■□□□ 1.4
USP40-215ENST00000484528 E9PMD0 336 aa23.77■■□□□ 1.4
USP40-215ENST00000484528 TADA2AO75478 443 aa23.77■■□□□ 1.4
USP40-215ENST00000484528 CDC25AP30304 524 aa23.77■■□□□ 1.4
USP40-215ENST00000484528 USP41Q3LFD5 358 aa23.77■■□□□ 1.4
USP40-215ENST00000484528 MCTP1Q6DN14 999 aa23.77■■□□□ 1.4
USP40-215ENST00000484528 IGSF22Q8N9C0 903 aa23.77■■□□□ 1.4
USP40-215ENST00000484528 CCDC195A0A1B0GUA6 201 aa23.76■■□□□ 1.39
USP40-215ENST00000484528 KIF4AO95239 1232 aa23.76■■□□□ 1.39
USP40-215ENST00000484528 RABEP1Q15276 862 aa23.76■■□□□ 1.39
USP40-215ENST00000484528 IL17AQ16552 155 aa23.76■■□□□ 1.39
USP40-215ENST00000484528 PRSS55Q6UWB4 352 aaPredicted RBP23.76■■□□□ 1.39
USP40-215ENST00000484528 C15orf39Q6ZRI6 1047 aa23.76■■□□□ 1.39
USP40-215ENST00000484528 UBALD2Q8IYN6 164 aa23.76■■□□□ 1.39
USP40-215ENST00000484528 PLCD3Q8N3E9 789 aa23.76■■□□□ 1.39
USP40-215ENST00000484528 KIFAP3Q92845 792 aa23.76■■□□□ 1.39
USP40-215ENST00000484528 ACSF2Q96CM8 615 aaPredicted RBP23.76■■□□□ 1.39
USP40-215ENST00000484528 RAB34Q9BZG1 259 aa23.76■■□□□ 1.39
USP40-215ENST00000484528 PDIA5Q14554 519 aa23.75■■□□□ 1.39
USP40-215ENST00000484528 RTP2Q5QGT7 225 aa23.75■■□□□ 1.39
USP40-215ENST00000484528 NT5DC1Q5TFE4 455 aa23.75■■□□□ 1.39
USP40-215ENST00000484528 OTOP3Q7RTS5 596 aa23.75■■□□□ 1.39
USP40-215ENST00000484528 CMASQ8NFW8 434 aaPredicted RBP23.75■■□□□ 1.39
USP40-215ENST00000484528 CITO14578 2027 aa23.75■■□□□ 1.39
USP40-215ENST00000484528 SF3B1O75533 1304 aaKnown RBP eCLIP23.75■■□□□ 1.398e-6■■■■■ 107
USP40-215ENST00000484528 CCDC169A6NNP5 214 aa23.74■■□□□ 1.39
USP40-215ENST00000484528 TGM5O43548 720 aa23.74■■□□□ 1.39
USP40-215ENST00000484528 ST18O60284 1047 aa23.74■■□□□ 1.39
USP40-215ENST00000484528 CD2BP2O95400 341 aaKnown RBP23.74■■□□□ 1.39
USP40-215ENST00000484528 THP07101 528 aa23.74■■□□□ 1.39
USP40-215ENST00000484528 MRE11P49959 708 aa23.74■■□□□ 1.39
USP40-215ENST00000484528 EFNA5P52803 228 aa23.74■■□□□ 1.39
USP40-215ENST00000484528 ZRSR1Q15695 479 aaKnown RBP23.74■■□□□ 1.39
USP40-215ENST00000484528 GLRA4Q5JXX5 417 aa23.74■■□□□ 1.39
USP40-215ENST00000484528 ATF7IP2Q5U623 682 aa23.74■■□□□ 1.39
USP40-215ENST00000484528 KRT79Q5XKE5 535 aa23.74■■□□□ 1.39
USP40-215ENST00000484528 ELMSAN1Q6PJG2 1045 aa23.74■■□□□ 1.39
USP40-215ENST00000484528 KCNK18Q7Z418 384 aa23.74■■□□□ 1.39
USP40-215ENST00000484528 PHOX2BQ99453 314 aa23.74■■□□□ 1.39
USP40-215ENST00000484528 RUSC1Q9BVN2 902 aa23.74■■□□□ 1.39
USP40-215ENST00000484528 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.74■■□□□ 1.39
USP40-215ENST00000484528 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP23.74■■□□□ 1.39
USP40-215ENST00000484528 HIP1RO75146 1068 aa23.73■■□□□ 1.39
USP40-215ENST00000484528 AVPR2P30518 371 aa23.73■■□□□ 1.39
USP40-215ENST00000484528 PEX3P56589 373 aa23.73■■□□□ 1.39
USP40-215ENST00000484528 NAB2Q15742 525 aa23.73■■□□□ 1.39
USP40-215ENST00000484528 DCAF4L1Q3SXM0 396 aa23.73■■□□□ 1.39
USP40-215ENST00000484528 FAM171A1Q5VUB5 890 aa23.73■■□□□ 1.39
USP40-215ENST00000484528 CEP57Q86XR8 500 aa23.73■■□□□ 1.39
USP40-215ENST00000484528 DAW1Q8N136 415 aa23.73■■□□□ 1.39
USP40-215ENST00000484528 SMG7Q92540 1137 aaKnown RBP23.73■■□□□ 1.39
USP40-215ENST00000484528 TMX3Q96JJ7 454 aa23.73■■□□□ 1.39
USP40-215ENST00000484528 DNM3Q9UQ16 869 aa23.73■■□□□ 1.39
USP40-215ENST00000484528 KIF3AQ9Y496 699 aa23.73■■□□□ 1.39
USP40-215ENST00000484528 K7ERI5 159 aa23.72■■□□□ 1.39
USP40-215ENST00000484528 N4BP1O75113 896 aaKnown RBP23.72■■□□□ 1.39
USP40-215ENST00000484528 GBP2P32456 591 aaPredicted RBP23.72■■□□□ 1.39
USP40-215ENST00000484528 NPTX2P47972 431 aa23.72■■□□□ 1.39
USP40-215ENST00000484528 TCF15Q12870 199 aa23.72■■□□□ 1.39
USP40-215ENST00000484528 DTHD1Q6ZMT9 781 aa23.72■■□□□ 1.39
USP40-215ENST00000484528 CEP120Q8N960 986 aa23.72■■□□□ 1.39
USP40-215ENST00000484528 ZNF707Q96C28 371 aaPredicted RBP23.72■■□□□ 1.39
USP40-215ENST00000484528 MMTAG2Q9BU76 263 aaKnown RBP23.72■■□□□ 1.39
USP40-215ENST00000484528 FNIP2Q9P278 1114 aa23.72■■□□□ 1.39
USP40-215ENST00000484528 DPP7Q9UHL4 492 aa23.72■■□□□ 1.39
USP40-215ENST00000484528 STK24Q9Y6E0 443 aa23.72■■□□□ 1.39
USP40-215ENST00000484528 CLUHO75153 1309 aa23.72■■□□□ 1.39
USP40-215ENST00000484528 PHLPP2Q6ZVD8 1323 aa23.71■■□□□ 1.39
USP40-215ENST00000484528 LAD1O00515 517 aa23.71■■□□□ 1.39
USP40-215ENST00000484528 IGFBP6P24592 240 aaPredicted RBP23.71■■□□□ 1.39
USP40-215ENST00000484528 GJB2P29033 226 aa23.71■■□□□ 1.39
USP40-215ENST00000484528 PRPHP41219 470 aa23.71■■□□□ 1.39
USP40-215ENST00000484528 PTPN5P54829 565 aa23.71■■□□□ 1.39
USP40-215ENST00000484528 TTPALQ9BTX7 342 aa23.71■■□□□ 1.39
USP40-215ENST00000484528 PIDD1Q9HB75 910 aa23.71■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms