RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 ZSCAN20P17040 1043 aaPredicted RBP11.04□□□□□ -0.64
USP39-215ENST00000481409 RFC2P35250 354 aa11.04□□□□□ -0.64
USP39-215ENST00000481409 PBX1P40424 430 aa11.04□□□□□ -0.64
USP39-215ENST00000481409 GSDMDP57764 484 aa11.04□□□□□ -0.64
USP39-215ENST00000481409 TMEM62Q0P6H9 643 aa11.04□□□□□ -0.64
USP39-215ENST00000481409 PAK2Q13177 524 aa11.04□□□□□ -0.64
USP39-215ENST00000481409 HSP90AA4PQ58FG1 418 aa11.04□□□□□ -0.64
USP39-215ENST00000481409 ZNF618Q5T7W0 954 aa11.04□□□□□ -0.64
USP39-215ENST00000481409 CRELD2Q6UXH1 353 aaPredicted RBP11.04□□□□□ -0.64
USP39-215ENST00000481409 FAM228AQ86W67 206 aa11.04□□□□□ -0.64
USP39-215ENST00000481409 FMNL3Q8IVF7 1028 aa11.04□□□□□ -0.64
USP39-215ENST00000481409 TMEM40Q8WWA1 233 aa11.04□□□□□ -0.64
USP39-215ENST00000481409 NAP1L5Q96NT1 182 aaPredicted RBP11.04□□□□□ -0.64
USP39-215ENST00000481409 CCDC94Q9BW85 323 aaPredicted RBP11.04□□□□□ -0.64
USP39-215ENST00000481409 TRIM6Q9C030 488 aaPredicted RBP11.04□□□□□ -0.64
USP39-215ENST00000481409 TRPV6Q9H1D0 765 aa11.04□□□□□ -0.64
USP39-215ENST00000481409 CDT1Q9H211 546 aa11.04□□□□□ -0.64
USP39-215ENST00000481409 RPF1Q9H9Y2 349 aaKnown RBP11.04□□□□□ -0.64
USP39-215ENST00000481409 CDHR5Q9HBB8 845 aa11.04□□□□□ -0.64
USP39-215ENST00000481409 TMEM8AQ9HCN3 771 aa11.04□□□□□ -0.64
USP39-215ENST00000481409 RBAKQ9NYW8 714 aaPredicted RBP11.04□□□□□ -0.64
USP39-215ENST00000481409 FBXL5Q9UKA1 691 aa11.04□□□□□ -0.64
USP39-215ENST00000481409 PIN4Q9Y237 131 aaKnown RBP11.04□□□□□ -0.64
USP39-215ENST00000481409 USP20Q9Y2K6 914 aa11.04□□□□□ -0.64
USP39-215ENST00000481409 NOC2LQ9Y3T9 749 aaKnown RBP11.04□□□□□ -0.64
USP39-215ENST00000481409 HTTP42858 3142 aa11.04□□□□□ -0.64
USP39-215ENST00000481409 TISP43B9A030 160 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 PES1O00541 588 aaKnown RBP11.03□□□□□ -0.64
USP39-215ENST00000481409 ZNF623O75123 536 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 ZC3H11AO75152 810 aaKnown RBP eCLIP11.03□□□□□ -0.64
USP39-215ENST00000481409 MYCP01106 439 aaPredicted RBP11.03□□□□□ -0.64
USP39-215ENST00000481409 EDN1P05305 212 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 RFX1P22670 979 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 FMO5P49326 533 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 YARSP54577 528 aaKnown RBP11.03□□□□□ -0.64
USP39-215ENST00000481409 DCAF17Q5H9S7 520 aaPredicted RBP11.03□□□□□ -0.64
USP39-215ENST00000481409 TCERG1LQ5VWI1 586 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 KRT39Q6A163 491 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 GBP6Q6ZN66 633 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 LRRC8DQ7L1W4 858 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 CBWD2Q8IUF1 395 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 WDR49Q8IV35 697 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 DRC7Q8IY82 874 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 RDH13Q8NBN7 331 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 CACTINQ8WUQ7 758 aaKnown RBP11.03□□□□□ -0.64
USP39-215ENST00000481409 WNT8BQ93098 351 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 SAAL1Q96ER3 474 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 EEF2KMTQ96G04 330 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 FAXDC2Q96IV6 333 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 ZNF668Q96K58 619 aaPredicted RBP11.03□□□□□ -0.64
USP39-215ENST00000481409 ZBTB45Q96K62 511 aaPredicted RBP11.03□□□□□ -0.64
USP39-215ENST00000481409 ACAP3Q96P50 834 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 PPP1R16BQ96T49 567 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 CGRRF1Q99675 332 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 IKZF4Q9H2S9 585 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 ERVK-5Q9HDB9 667 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 UBN1Q9NPG3 1134 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 PLCB1Q9NQ66 1216 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 ST3GAL5Q9UNP4 418 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 COQ4Q9Y3A0 265 aa11.03□□□□□ -0.64
USP39-215ENST00000481409 A0A1W2PQJ5 194 aa11.02□□□□□ -0.65
USP39-215ENST00000481409 TTLL13PA6NNM8 815 aa11.02□□□□□ -0.65
USP39-215ENST00000481409 XPOTO43592 962 aaKnown RBP11.02□□□□□ -0.65
USP39-215ENST00000481409 CTSHP09668 335 aa11.02□□□□□ -0.65
USP39-215ENST00000481409 STAG3L1P0CL83 205 aa11.02□□□□□ -0.65
USP39-215ENST00000481409 ACOT2P49753 483 aa11.02□□□□□ -0.65
USP39-215ENST00000481409 LPIN1Q14693 890 aa11.02□□□□□ -0.65
USP39-215ENST00000481409 EXOC3L4Q17RC7 722 aa11.02□□□□□ -0.65
USP39-215ENST00000481409 HS1BP3Q53T59 392 aa11.02□□□□□ -0.65
USP39-215ENST00000481409 TRAF7Q6Q0C0 670 aa11.02□□□□□ -0.65
USP39-215ENST00000481409 ZBTB33Q86T24 672 aa11.02□□□□□ -0.65
USP39-215ENST00000481409 PPP1R13LQ8WUF5 828 aa11.02□□□□□ -0.65
USP39-215ENST00000481409 PGBD4Q96DM1 585 aa11.02□□□□□ -0.65
USP39-215ENST00000481409 CPB2Q96IY4 423 aa11.02□□□□□ -0.65
USP39-215ENST00000481409 HAPLN2Q9GZV7 340 aa11.02□□□□□ -0.65
USP39-215ENST00000481409 NUCKS1Q9H1E3 243 aaKnown RBP11.02□□□□□ -0.65
USP39-215ENST00000481409 C1orf112Q9NSG2 853 aa11.02□□□□□ -0.65
USP39-215ENST00000481409 INTS13Q9NVM9 706 aa11.02□□□□□ -0.65
USP39-215ENST00000481409 PADI3Q9ULW8 664 aa11.02□□□□□ -0.65
USP39-215ENST00000481409 C2CD2Q9Y426 696 aa11.02□□□□□ -0.65
USP39-215ENST00000481409 RALGAPA2Q2PPJ7 1873 aa11.02□□□□□ -0.65
USP39-215ENST00000481409 CEP350Q5VT06 3117 aa11.02□□□□□ -0.65
USP39-215ENST00000481409 A0A0U1RQF3 1178 aa11.01□□□□□ -0.65
USP39-215ENST00000481409 GOLGA8IPA6NC78 632 aa11.01□□□□□ -0.65
USP39-215ENST00000481409 GOLGA8JA6NMD2 632 aa11.01□□□□□ -0.65
USP39-215ENST00000481409 NRDCO43847 1150 aa11.01□□□□□ -0.65
USP39-215ENST00000481409 PQBP1O60828 265 aaKnown RBP11.01□□□□□ -0.65
USP39-215ENST00000481409 CSDE1O75534 798 aaKnown RBP11.01□□□□□ -0.65
USP39-215ENST00000481409 EOMESO95936 686 aa11.01□□□□□ -0.65
USP39-215ENST00000481409 PFKMP08237 780 aa11.01□□□□□ -0.65
USP39-215ENST00000481409 CLTBP09497 229 aa11.01□□□□□ -0.65
USP39-215ENST00000481409 MXI1P50539 228 aa11.01□□□□□ -0.65
USP39-215ENST00000481409 MYL7Q01449 175 aa11.01□□□□□ -0.65
USP39-215ENST00000481409 TLE2Q04725 743 aa11.01□□□□□ -0.65
USP39-215ENST00000481409 FAAP100Q0VG06 881 aa11.01□□□□□ -0.65
USP39-215ENST00000481409 NFX1Q12986 1120 aaKnown RBP11.01□□□□□ -0.65
USP39-215ENST00000481409 DSC3Q14574 896 aa11.01□□□□□ -0.65
USP39-215ENST00000481409 DUOXA2Q1HG44 320 aa11.01□□□□□ -0.65
USP39-215ENST00000481409 EEF1DP3Q658K8 133 aa11.01□□□□□ -0.65
USP39-215ENST00000481409 TWF2Q6IBS0 349 aaKnown RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms