RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 RIN2Q8WYP3 895 aaPredicted RBP16.83■□□□□ 0.28
LIMS3-203ENST00000480744 IFT74Q96LB3 600 aa16.83■□□□□ 0.28
LIMS3-203ENST00000480744 KIF2CQ99661 725 aa16.83■□□□□ 0.28
LIMS3-203ENST00000480744 ADPGKQ9BRR6 497 aa16.83■□□□□ 0.28
LIMS3-203ENST00000480744 KIFC3Q9BVG8 833 aa16.83■□□□□ 0.28
LIMS3-203ENST00000480744 BHMT2Q9H2M3 363 aa16.83■□□□□ 0.28
LIMS3-203ENST00000480744 RXFP1Q9HBX9 757 aa16.83■□□□□ 0.28
LIMS3-203ENST00000480744 ZMYM2Q9UBW7 1377 aa16.83■□□□□ 0.28
LIMS3-203ENST00000480744 DPP7Q9UHL4 492 aa16.83■□□□□ 0.28
LIMS3-203ENST00000480744 KIAA1024Q9UPX6 916 aa16.83■□□□□ 0.28
LIMS3-203ENST00000480744 CCDC195A0A1B0GUA6 201 aa16.82■□□□□ 0.28
LIMS3-203ENST00000480744 RECQL4O94761 1208 aa16.82■□□□□ 0.28
LIMS3-203ENST00000480744 EFEMP2O95967 443 aa16.82■□□□□ 0.28
LIMS3-203ENST00000480744 RPL17P18621 184 aaKnown RBP16.82■□□□□ 0.28
LIMS3-203ENST00000480744 MUTP22033 750 aa16.82■□□□□ 0.28
LIMS3-203ENST00000480744 TUSC3Q13454 348 aa16.82■□□□□ 0.28
LIMS3-203ENST00000480744 HSP90AA2PQ14568 343 aaPredicted RBP16.82■□□□□ 0.28
LIMS3-203ENST00000480744 C15orf39Q6ZRI6 1047 aa16.82■□□□□ 0.28
LIMS3-203ENST00000480744 C4orf32Q8N8J7 132 aa16.82■□□□□ 0.28
LIMS3-203ENST00000480744 SNX29Q8TEQ0 813 aa16.82■□□□□ 0.28
LIMS3-203ENST00000480744 PAAF1Q9BRP4 392 aa16.82■□□□□ 0.28
LIMS3-203ENST00000480744 CCDC113Q9H0I3 377 aa16.82■□□□□ 0.28
LIMS3-203ENST00000480744 CHST7Q9NS84 486 aa16.82■□□□□ 0.28
LIMS3-203ENST00000480744 DDX19AQ9NUU7 478 aaKnown RBP16.82■□□□□ 0.28
LIMS3-203ENST00000480744 GDAQ9Y2T3 454 aa16.82■□□□□ 0.28
LIMS3-203ENST00000480744 VWA8A3KMH1 1905 aa16.82■□□□□ 0.28
LIMS3-203ENST00000480744 SF3B1O75533 1304 aaKnown RBP eCLIP16.81■□□□□ 0.28
LIMS3-203ENST00000480744 ACKR2O00590 384 aa16.81■□□□□ 0.28
LIMS3-203ENST00000480744 RFPL2O75678 378 aa16.81■□□□□ 0.28
LIMS3-203ENST00000480744 EDN1P05305 212 aa16.81■□□□□ 0.28
LIMS3-203ENST00000480744 GBP2P32456 591 aaPredicted RBP16.81■□□□□ 0.28
LIMS3-203ENST00000480744 PTGDRQ13258 359 aa16.81■□□□□ 0.28
LIMS3-203ENST00000480744 C8orf34Q49A92 452 aa16.81■□□□□ 0.28
LIMS3-203ENST00000480744 EEF1DP3Q658K8 133 aa16.81■□□□□ 0.28
LIMS3-203ENST00000480744 PRSS55Q6UWB4 352 aaPredicted RBP16.81■□□□□ 0.28
LIMS3-203ENST00000480744 CMASQ8NFW8 434 aaPredicted RBP16.81■□□□□ 0.28
LIMS3-203ENST00000480744 SMG7Q92540 1137 aaKnown RBP16.81■□□□□ 0.28
LIMS3-203ENST00000480744 PHOX2BQ99453 314 aa16.81■□□□□ 0.28
LIMS3-203ENST00000480744 RAB34Q9BZG1 259 aa16.81■□□□□ 0.28
LIMS3-203ENST00000480744 MFSD1Q9H3U5 465 aa16.81■□□□□ 0.28
LIMS3-203ENST00000480744 PIDD1Q9HB75 910 aa16.81■□□□□ 0.28
LIMS3-203ENST00000480744 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.81■□□□□ 0.28
LIMS3-203ENST00000480744 PCDHB6Q9Y5E3 794 aa16.81■□□□□ 0.28
LIMS3-203ENST00000480744 DOCK8Q8NF50 2099 aa16.81■□□□□ 0.28
LIMS3-203ENST00000480744 DOCK6Q96HP0 2047 aa16.8■□□□□ 0.28
LIMS3-203ENST00000480744 PTGESO14684 152 aa16.8■□□□□ 0.28
LIMS3-203ENST00000480744 TGM5O43548 720 aa16.8■□□□□ 0.28
LIMS3-203ENST00000480744 KIF4AO95239 1232 aa16.8■□□□□ 0.28
LIMS3-203ENST00000480744 THP07101 528 aa16.8■□□□□ 0.28
LIMS3-203ENST00000480744 U2AF2P26368 475 aaKnown RBP eCLIP16.8■□□□□ 0.28
LIMS3-203ENST00000480744 TOB1P50616 345 aaPredicted RBP16.8■□□□□ 0.28
LIMS3-203ENST00000480744 CREMQ03060 361 aa16.8■□□□□ 0.28
LIMS3-203ENST00000480744 TCF15Q12870 199 aa16.8■□□□□ 0.28
LIMS3-203ENST00000480744 DCAF4L1Q3SXM0 396 aa16.8■□□□□ 0.28
LIMS3-203ENST00000480744 CEP57Q86XR8 500 aa16.8■□□□□ 0.28
LIMS3-203ENST00000480744 KIFAP3Q92845 792 aa16.8■□□□□ 0.28
LIMS3-203ENST00000480744 CXCL16Q9H2A7 254 aa16.8■□□□□ 0.28
LIMS3-203ENST00000480744 CITO14578 2027 aa16.8■□□□□ 0.28
LIMS3-203ENST00000480744 CLUHO75153 1309 aa16.79■□□□□ 0.28
LIMS3-203ENST00000480744 CCDC169A6NNP5 214 aa16.79■□□□□ 0.28
LIMS3-203ENST00000480744 PP2D1A8MPX8 630 aa16.79■□□□□ 0.28
LIMS3-203ENST00000480744 E9PMD0 336 aa16.79■□□□□ 0.28
LIMS3-203ENST00000480744 EFNA5P52803 228 aa16.79■□□□□ 0.28
LIMS3-203ENST00000480744 PDIA5Q14554 519 aa16.79■□□□□ 0.28
LIMS3-203ENST00000480744 RTP2Q5QGT7 225 aa16.79■□□□□ 0.28
LIMS3-203ENST00000480744 ATF7IP2Q5U623 682 aa16.79■□□□□ 0.28
LIMS3-203ENST00000480744 FAM171A1Q5VUB5 890 aa16.79■□□□□ 0.28
LIMS3-203ENST00000480744 KRT79Q5XKE5 535 aa16.79■□□□□ 0.28
LIMS3-203ENST00000480744 MCTP1Q6DN14 999 aa16.79■□□□□ 0.28
LIMS3-203ENST00000480744 STAMQ92783 540 aa16.79■□□□□ 0.28
LIMS3-203ENST00000480744 PLEKHA4Q9H4M7 779 aa16.79■□□□□ 0.28
LIMS3-203ENST00000480744 FAM86C1Q9NVL1 165 aa16.79■□□□□ 0.28
LIMS3-203ENST00000480744 FNIP2Q9P278 1114 aa16.79■□□□□ 0.28
LIMS3-203ENST00000480744 STK24Q9Y6E0 443 aa16.79■□□□□ 0.28
LIMS3-203ENST00000480744 K7ERI5 159 aa16.78■□□□□ 0.28
LIMS3-203ENST00000480744 TDGQ13569 410 aa16.78■□□□□ 0.28
LIMS3-203ENST00000480744 ZRSR1Q15695 479 aaKnown RBP16.78■□□□□ 0.28
LIMS3-203ENST00000480744 GLRA4Q5JXX5 417 aa16.78■□□□□ 0.28
LIMS3-203ENST00000480744 NT5DC1Q5TFE4 455 aa16.78■□□□□ 0.28
LIMS3-203ENST00000480744 CYP26C1Q6V0L0 522 aa16.78■□□□□ 0.28
LIMS3-203ENST00000480744 APBB1IPQ7Z5R6 666 aaPredicted RBP16.78■□□□□ 0.28
LIMS3-203ENST00000480744 IGSF22Q8N9C0 903 aa16.78■□□□□ 0.28
LIMS3-203ENST00000480744 HDAC7Q8WUI4 952 aa16.78■□□□□ 0.28
LIMS3-203ENST00000480744 ZNF707Q96C28 371 aaPredicted RBP16.78■□□□□ 0.28
LIMS3-203ENST00000480744 TTPALQ9BTX7 342 aa16.78■□□□□ 0.28
LIMS3-203ENST00000480744 KCNK12Q9HB15 430 aa16.78■□□□□ 0.28
LIMS3-203ENST00000480744 WDR6Q9NNW5 1121 aaKnown RBP16.78■□□□□ 0.28
LIMS3-203ENST00000480744 DNM3Q9UQ16 869 aa16.78■□□□□ 0.28
LIMS3-203ENST00000480744 KIF3AQ9Y496 699 aa16.78■□□□□ 0.28
LIMS3-203ENST00000480744 ST18O60284 1047 aa16.77■□□□□ 0.28
LIMS3-203ENST00000480744 N4BP1O75113 896 aaKnown RBP16.77■□□□□ 0.28
LIMS3-203ENST00000480744 HIP1RO75146 1068 aa16.77■□□□□ 0.28
LIMS3-203ENST00000480744 CDC25AP30304 524 aa16.77■□□□□ 0.28
LIMS3-203ENST00000480744 PEX3P56589 373 aa16.77■□□□□ 0.28
LIMS3-203ENST00000480744 RABEP1Q15276 862 aa16.77■□□□□ 0.28
LIMS3-203ENST00000480744 PSMD5Q16401 504 aa16.77■□□□□ 0.28
LIMS3-203ENST00000480744 DTHD1Q6ZMT9 781 aa16.77■□□□□ 0.28
LIMS3-203ENST00000480744 GPR65Q8IYL9 337 aa16.77■□□□□ 0.28
LIMS3-203ENST00000480744 TMEM105Q8N8V8 129 aa16.77■□□□□ 0.28
LIMS3-203ENST00000480744 FLCNQ8NFG4 579 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms