RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 CLRN3Q8NCR9 226 aa6.29□□□□□ -1.4
VPS50-214ENST00000477935 Q8TCH9 128 aa6.29□□□□□ -1.4
VPS50-214ENST00000477935 GCDHQ92947 438 aaPredicted RBP6.29□□□□□ -1.4
VPS50-214ENST00000477935 HIST1H2AHQ96KK5 128 aa6.29□□□□□ -1.4
VPS50-214ENST00000477935 HIST1H2AJQ99878 128 aa6.29□□□□□ -1.4
VPS50-214ENST00000477935 SOX7Q9BT81 388 aa6.29□□□□□ -1.4
VPS50-214ENST00000477935 PLA2G12BQ9BX93 195 aa6.29□□□□□ -1.4
VPS50-214ENST00000477935 ANO3Q9BYT9 981 aa6.29□□□□□ -1.4
VPS50-214ENST00000477935 MSL2Q9HCI7 577 aa6.29□□□□□ -1.4
VPS50-214ENST00000477935 NOC2LQ9Y3T9 749 aaKnown RBP6.29□□□□□ -1.4
VPS50-214ENST00000477935 PCDHB6Q9Y5E3 794 aa6.29□□□□□ -1.4
VPS50-214ENST00000477935 PRSS38A1L453 326 aa6.28□□□□□ -1.4
VPS50-214ENST00000477935 ZNF623O75123 536 aa6.28□□□□□ -1.4
VPS50-214ENST00000477935 ADRB1P08588 477 aa6.28□□□□□ -1.4
VPS50-214ENST00000477935 ADCY7P51828 1080 aa6.28□□□□□ -1.4
VPS50-214ENST00000477935 SESN3P58005 492 aa6.28□□□□□ -1.4
VPS50-214ENST00000477935 ATP2C1P98194 919 aaPredicted RBP6.28□□□□□ -1.4
VPS50-214ENST00000477935 NFKB2Q00653 900 aa6.28□□□□□ -1.4
VPS50-214ENST00000477935 TCIRG1Q13488 830 aa6.28□□□□□ -1.4
VPS50-214ENST00000477935 ACAP1Q15027 740 aa6.28□□□□□ -1.4
VPS50-214ENST00000477935 CLEC14AQ86T13 490 aa6.28□□□□□ -1.4
VPS50-214ENST00000477935 GPR135Q8IZ08 494 aa6.28□□□□□ -1.4
VPS50-214ENST00000477935 CDYL2Q8N8U2 506 aa6.28□□□□□ -1.4
VPS50-214ENST00000477935 NGDNQ8NEJ9 315 aaKnown RBP6.28□□□□□ -1.4
VPS50-214ENST00000477935 SHCBP1Q8NEM2 672 aa6.28□□□□□ -1.4
VPS50-214ENST00000477935 WWC2-AS2Q96NR7 200 aa6.28□□□□□ -1.4
VPS50-214ENST00000477935 OR14A2Q96R54 314 aa6.28□□□□□ -1.4
VPS50-214ENST00000477935 SLC6A15Q9H2J7 730 aa6.28□□□□□ -1.4
VPS50-214ENST00000477935 TMX1Q9H3N1 280 aa6.28□□□□□ -1.4
VPS50-214ENST00000477935 RBM8AQ9Y5S9 174 aaKnown RBP6.28□□□□□ -1.4
VPS50-214ENST00000477935 NUMBLQ9Y6R0 609 aa6.28□□□□□ -1.4
VPS50-214ENST00000477935 SBNO2Q9Y2G9 1366 aa6.28□□□□□ -1.4
VPS50-214ENST00000477935 ANKARQ7Z5J8 1434 aa6.27□□□□□ -1.41
VPS50-214ENST00000477935 PMS2P1A4D2B8 440 aa6.27□□□□□ -1.41
VPS50-214ENST00000477935 DAPK3O43293 454 aa6.27□□□□□ -1.41
VPS50-214ENST00000477935 RAD17O75943 681 aa6.27□□□□□ -1.41
VPS50-214ENST00000477935 CPEP16870 476 aa6.27□□□□□ -1.41
VPS50-214ENST00000477935 RPS19P39019 145 aaKnown RBP6.27□□□□□ -1.41
VPS50-214ENST00000477935 KRTAP10-2P60368 255 aa6.27□□□□□ -1.41
VPS50-214ENST00000477935 TMPRSS15P98073 1019 aa6.27□□□□□ -1.41
VPS50-214ENST00000477935 SAFB2Q14151 953 aaKnown RBP eCLIP6.27□□□□□ -1.41
VPS50-214ENST00000477935 STAT4Q14765 748 aa6.27□□□□□ -1.41
VPS50-214ENST00000477935 ZNF585AQ6P3V2 769 aa6.27□□□□□ -1.41
VPS50-214ENST00000477935 PTF1AQ7RTS3 328 aa6.27□□□□□ -1.41
VPS50-214ENST00000477935 PLA2G15Q8NCC3 412 aa6.27□□□□□ -1.41
VPS50-214ENST00000477935 PPP1R14CQ8TAE6 165 aa6.27□□□□□ -1.41
VPS50-214ENST00000477935 C1QTNF3Q9BXJ4 246 aa6.27□□□□□ -1.41
VPS50-214ENST00000477935 FAM126AQ9BYI3 521 aaPredicted RBP6.27□□□□□ -1.41
VPS50-214ENST00000477935 OSBPL6Q9BZF3 934 aa6.27□□□□□ -1.41
VPS50-214ENST00000477935 DEF6Q9H4E7 631 aa6.27□□□□□ -1.41
VPS50-214ENST00000477935 TOPORSQ9NS56 1045 aaPredicted RBP6.27□□□□□ -1.41
VPS50-214ENST00000477935 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.27□□□□□ -1.41
VPS50-214ENST00000477935 KCNG1Q9UIX4 513 aa6.27□□□□□ -1.41
VPS50-214ENST00000477935 TMPRSS11EQ9UL52 423 aa6.27□□□□□ -1.41
VPS50-214ENST00000477935 USP18Q9UMW8 372 aa6.27□□□□□ -1.41
VPS50-214ENST00000477935 SLC30A1Q9Y6M5 507 aa6.27□□□□□ -1.41
VPS50-214ENST00000477935 PLEKHH1Q9ULM0 1364 aa6.27□□□□□ -1.41
VPS50-214ENST00000477935 CLEC2LP0C7M8 214 aa6.26□□□□□ -1.41
VPS50-214ENST00000477935 ZNF20P17024 532 aa6.26□□□□□ -1.41
VPS50-214ENST00000477935 POU3F3P20264 500 aaPredicted RBP6.26□□□□□ -1.41
VPS50-214ENST00000477935 HMGB2P26583 209 aaKnown RBP6.26□□□□□ -1.41
VPS50-214ENST00000477935 BPIFB4P59827 614 aa6.26□□□□□ -1.41
VPS50-214ENST00000477935 ADAM8P78325 824 aa6.26□□□□□ -1.41
VPS50-214ENST00000477935 RIN1Q13671 783 aa6.26□□□□□ -1.41
VPS50-214ENST00000477935 FAM50AQ14320 339 aaKnown RBP6.26□□□□□ -1.41
VPS50-214ENST00000477935 PDCD1Q15116 288 aa6.26□□□□□ -1.41
VPS50-214ENST00000477935 CCDC62Q6P9F0 684 aa6.26□□□□□ -1.41
VPS50-214ENST00000477935 LHFPL2Q6ZUX7 228 aa6.26□□□□□ -1.41
VPS50-214ENST00000477935 C16orf71Q8IYS4 520 aaPredicted RBP6.26□□□□□ -1.41
VPS50-214ENST00000477935 ANKRD53Q8N9V6 530 aa6.26□□□□□ -1.41
VPS50-214ENST00000477935 GAB3Q8WWW8 586 aa6.26□□□□□ -1.41
VPS50-214ENST00000477935 RABGGTAQ92696 567 aa6.26□□□□□ -1.41
VPS50-214ENST00000477935 DVL3Q92997 716 aaPredicted RBP6.26□□□□□ -1.41
VPS50-214ENST00000477935 RPL10LQ96L21 214 aaKnown RBP6.26□□□□□ -1.41
VPS50-214ENST00000477935 KLC2Q9H0B6 622 aa6.26□□□□□ -1.41
VPS50-214ENST00000477935 WNT8AQ9H1J5 351 aa6.26□□□□□ -1.41
VPS50-214ENST00000477935 NELFAQ9H3P2 528 aa6.26□□□□□ -1.41
VPS50-214ENST00000477935 AGO3Q9H9G7 860 aaKnown RBP6.26□□□□□ -1.41
VPS50-214ENST00000477935 SPC25Q9HBM1 224 aa6.26□□□□□ -1.41
VPS50-214ENST00000477935 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.26□□□□□ -1.41
VPS50-214ENST00000477935 TCAF1Q9Y4C2 921 aa6.26□□□□□ -1.41
VPS50-214ENST00000477935 ROCK1Q13464 1354 aa6.26□□□□□ -1.41
VPS50-214ENST00000477935 EIF3AQ14152 1382 aaKnown RBP6.26□□□□□ -1.41
VPS50-214ENST00000477935 ABCA3Q99758 1704 aa6.25□□□□□ -1.41
VPS50-214ENST00000477935 LOC105371045A0A1W2PR82 267 aa6.25□□□□□ -1.41
VPS50-214ENST00000477935 EXOC5O00471 708 aa6.25□□□□□ -1.41
VPS50-214ENST00000477935 TOX4O94842 621 aa6.25□□□□□ -1.41
VPS50-214ENST00000477935 SEC24DO94855 1032 aaPredicted RBP6.25□□□□□ -1.41
VPS50-214ENST00000477935 FSBPO95073 299 aa6.25□□□□□ -1.41
VPS50-214ENST00000477935 HSPA1AP0DMV8 641 aaKnown RBP6.25□□□□□ -1.41
VPS50-214ENST00000477935 HSPA1BP0DMV9 641 aaKnown RBP6.25□□□□□ -1.41
VPS50-214ENST00000477935 SELENOPP49908 381 aa6.25□□□□□ -1.41
VPS50-214ENST00000477935 MAN2A1Q16706 1144 aa6.25□□□□□ -1.41
VPS50-214ENST00000477935 GAGE13Q4V321 117 aa6.25□□□□□ -1.41
VPS50-214ENST00000477935 IQSEC1Q6DN90 963 aa6.25□□□□□ -1.41
VPS50-214ENST00000477935 POLNQ7Z5Q5 900 aa6.25□□□□□ -1.41
VPS50-214ENST00000477935 GPHA2Q96T91 129 aa6.25□□□□□ -1.41
VPS50-214ENST00000477935 PRSS50Q9UI38 385 aa6.25□□□□□ -1.41
VPS50-214ENST00000477935 JAG2Q9Y219 1238 aa6.25□□□□□ -1.41
VPS50-214ENST00000477935 BRD4O60885 1362 aaPredicted RBP6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms