RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 PTPRHQ9HD43 1115 aa20.46■□□□□ 0.87
COL7A1-209ENST00000474432 ARHGAP28Q9P2N2 729 aa20.46■□□□□ 0.87
COL7A1-209ENST00000474432 ADAM28Q9UKQ2 775 aa20.46■□□□□ 0.87
COL7A1-209ENST00000474432 SMC3Q9UQE7 1217 aa20.46■□□□□ 0.87
COL7A1-209ENST00000474432 HCN4Q9Y3Q4 1203 aa20.46■□□□□ 0.87
COL7A1-209ENST00000474432 VWA8A3KMH1 1905 aa20.45■□□□□ 0.86
COL7A1-209ENST00000474432 MYH11P35749 1972 aa20.45■□□□□ 0.86
COL7A1-209ENST00000474432 H3BQV1 296 aa20.45■□□□□ 0.86
COL7A1-209ENST00000474432 CUL4AQ13619 759 aa20.45■□□□□ 0.86
COL7A1-209ENST00000474432 PTPN21Q16825 1174 aa20.45■□□□□ 0.86
COL7A1-209ENST00000474432 ATF7IP2Q5U623 682 aa20.45■□□□□ 0.86
COL7A1-209ENST00000474432 GPR149Q86SP6 731 aa20.45■□□□□ 0.86
COL7A1-209ENST00000474432 CABP7Q86V35 215 aa20.45■□□□□ 0.86
COL7A1-209ENST00000474432 LRRC15Q8TF66 581 aa20.45■□□□□ 0.86
COL7A1-209ENST00000474432 RIPOR3Q96MK2 946 aa20.45■□□□□ 0.86
COL7A1-209ENST00000474432 TNFSF13BQ9Y275 285 aa20.45■□□□□ 0.86
COL7A1-209ENST00000474432 VWA3AA6NCI4 1184 aa20.44■□□□□ 0.86
COL7A1-209ENST00000474432 SFI1A8K8P3 1242 aa20.44■□□□□ 0.86
COL7A1-209ENST00000474432 K7ERI5 159 aa20.44■□□□□ 0.86
COL7A1-209ENST00000474432 ABLIM1O14639 778 aa20.44■□□□□ 0.86
COL7A1-209ENST00000474432 NR1I2O75469 434 aa20.44■□□□□ 0.86
COL7A1-209ENST00000474432 GUCY2CP25092 1073 aa20.44■□□□□ 0.86
COL7A1-209ENST00000474432 HSP90AA2PQ14568 343 aaPredicted RBP20.44■□□□□ 0.86
COL7A1-209ENST00000474432 TMEM119Q4V9L6 283 aa20.44■□□□□ 0.86
COL7A1-209ENST00000474432 ATAT1Q5SQI0 421 aa20.44■□□□□ 0.86
COL7A1-209ENST00000474432 LARP1BQ659C4 914 aaKnown RBP20.44■□□□□ 0.86
COL7A1-209ENST00000474432 ARL6IP4Q66PJ3 421 aaKnown RBP20.44■□□□□ 0.86
COL7A1-209ENST00000474432 BMP8AQ7Z5Y6 402 aa20.44■□□□□ 0.86
COL7A1-209ENST00000474432 GPR65Q8IYL9 337 aa20.44■□□□□ 0.86
COL7A1-209ENST00000474432 CEP120Q8N960 986 aa20.44■□□□□ 0.86
COL7A1-209ENST00000474432 PLIN2Q99541 437 aa20.44■□□□□ 0.86
COL7A1-209ENST00000474432 ACO2Q99798 780 aaKnown RBP20.44■□□□□ 0.86
COL7A1-209ENST00000474432 TMEM134Q9H6X4 195 aa20.44■□□□□ 0.86
COL7A1-209ENST00000474432 SFXN1Q9H9B4 322 aa20.44■□□□□ 0.86
COL7A1-209ENST00000474432 SSX2IPQ9Y2D8 614 aa20.44■□□□□ 0.86
COL7A1-209ENST00000474432 GDAQ9Y2T3 454 aa20.44■□□□□ 0.86
COL7A1-209ENST00000474432 ZDBF2Q9HCK1 2354 aa20.43■□□□□ 0.86
COL7A1-209ENST00000474432 TMEM221A6NGB7 291 aa20.43■□□□□ 0.86
COL7A1-209ENST00000474432 CASTOR2A6NHX0 329 aa20.43■□□□□ 0.86
COL7A1-209ENST00000474432 M0R296 226 aa20.43■□□□□ 0.86
COL7A1-209ENST00000474432 KIF4AO95239 1232 aa20.43■□□□□ 0.86
COL7A1-209ENST00000474432 PAPLNO95428 1278 aa20.43■□□□□ 0.86
COL7A1-209ENST00000474432 THP07101 528 aa20.43■□□□□ 0.86
COL7A1-209ENST00000474432 SLC12A3P55017 1021 aa20.43■□□□□ 0.86
COL7A1-209ENST00000474432 DCAF4L1Q3SXM0 396 aa20.43■□□□□ 0.86
COL7A1-209ENST00000474432 RTP2Q5QGT7 225 aa20.43■□□□□ 0.86
COL7A1-209ENST00000474432 LILRA6Q6PI73 481 aa20.43■□□□□ 0.86
COL7A1-209ENST00000474432 CD300LGQ6UXG3 332 aa20.43■□□□□ 0.86
COL7A1-209ENST00000474432 SYT2Q8N9I0 419 aaPredicted RBP20.43■□□□□ 0.86
COL7A1-209ENST00000474432 CMASQ8NFW8 434 aaPredicted RBP20.43■□□□□ 0.86
COL7A1-209ENST00000474432 ASIC4Q96FT7 647 aa20.43■□□□□ 0.86
COL7A1-209ENST00000474432 ADPGKQ9BRR6 497 aa20.43■□□□□ 0.86
COL7A1-209ENST00000474432 NTPCRQ9BSD7 190 aaKnown RBP20.43■□□□□ 0.86
COL7A1-209ENST00000474432 CDT1Q9H211 546 aa20.43■□□□□ 0.86
COL7A1-209ENST00000474432 TSHZ2Q9NRE2 1034 aa20.43■□□□□ 0.86
COL7A1-209ENST00000474432 NR2E1Q9Y466 385 aa20.43■□□□□ 0.86
COL7A1-209ENST00000474432 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.43■□□□□ 0.86
COL7A1-209ENST00000474432 PHLPP2Q6ZVD8 1323 aa20.43■□□□□ 0.86
COL7A1-209ENST00000474432 CCDC169A6NNP5 214 aa20.42■□□□□ 0.86
COL7A1-209ENST00000474432 MEFVO15553 781 aaPredicted RBP20.42■□□□□ 0.86
COL7A1-209ENST00000474432 ADH1AP07327 375 aa20.42■□□□□ 0.86
COL7A1-209ENST00000474432 PROZP22891 400 aa20.42■□□□□ 0.86
COL7A1-209ENST00000474432 GRIN1Q05586 938 aa20.42■□□□□ 0.86
COL7A1-209ENST00000474432 TMEM132AQ24JP5 1023 aa20.42■□□□□ 0.86
COL7A1-209ENST00000474432 USP41Q3LFD5 358 aa20.42■□□□□ 0.86
COL7A1-209ENST00000474432 ARSHQ5FYA8 562 aa20.42■□□□□ 0.86
COL7A1-209ENST00000474432 XKR4Q5GH76 650 aa20.42■□□□□ 0.86
COL7A1-209ENST00000474432 KCTD17Q8N5Z5 321 aa20.42■□□□□ 0.86
COL7A1-209ENST00000474432 HASPINQ8TF76 798 aa20.42■□□□□ 0.86
COL7A1-209ENST00000474432 DRC1Q96MC2 740 aa20.42■□□□□ 0.86
COL7A1-209ENST00000474432 PPP1R10Q96QC0 940 aaKnown RBP20.42■□□□□ 0.86
COL7A1-209ENST00000474432 TARS2Q9BW92 718 aaKnown RBP20.42■□□□□ 0.86
COL7A1-209ENST00000474432 MAN1C1Q9NR34 630 aa20.42■□□□□ 0.86
COL7A1-209ENST00000474432 FNIP2Q9P278 1114 aa20.42■□□□□ 0.86
COL7A1-209ENST00000474432 SLC16A4O15374 487 aa20.41■□□□□ 0.86
COL7A1-209ENST00000474432 TADA2AO75478 443 aa20.41■□□□□ 0.86
COL7A1-209ENST00000474432 RPL17P18621 184 aaKnown RBP20.41■□□□□ 0.86
COL7A1-209ENST00000474432 SIGLEC14Q08ET2 396 aa20.41■□□□□ 0.86
COL7A1-209ENST00000474432 ZRSR1Q15695 479 aaKnown RBP20.41■□□□□ 0.86
COL7A1-209ENST00000474432 PRSS55Q6UWB4 352 aaPredicted RBP20.41■□□□□ 0.86
COL7A1-209ENST00000474432 ALKAL1Q6UXT8 129 aa20.41■□□□□ 0.86
COL7A1-209ENST00000474432 C15orf39Q6ZRI6 1047 aa20.41■□□□□ 0.86
COL7A1-209ENST00000474432 ZDHHC14Q8IZN3 488 aa20.41■□□□□ 0.86
COL7A1-209ENST00000474432 RIN2Q8WYP3 895 aaPredicted RBP20.41■□□□□ 0.86
COL7A1-209ENST00000474432 FAM122AQ96E09 287 aa20.41■□□□□ 0.86
COL7A1-209ENST00000474432 C17orf75Q9HAS0 396 aa20.41■□□□□ 0.86
COL7A1-209ENST00000474432 KMT5AQ9NQR1 393 aa20.41■□□□□ 0.86
COL7A1-209ENST00000474432 USTQ9Y2C2 406 aa20.41■□□□□ 0.86
COL7A1-209ENST00000474432 KMT2EQ8IZD2 1858 aa20.41■□□□□ 0.86
COL7A1-209ENST00000474432 NPHP3-ACAD11A0A0J9YXS1 232 aa20.4■□□□□ 0.86
COL7A1-209ENST00000474432 RFPL2O75678 378 aa20.4■□□□□ 0.86
COL7A1-209ENST00000474432 BRD1O95696 1058 aa20.4■□□□□ 0.86
COL7A1-209ENST00000474432 GLUD1P00367 558 aa20.4■□□□□ 0.86
COL7A1-209ENST00000474432 C1RP00736 705 aa20.4■□□□□ 0.86
COL7A1-209ENST00000474432 PLA2G4BP0C869 781 aa20.4■□□□□ 0.86
COL7A1-209ENST00000474432 SPATA31D3P0C874 917 aa20.4■□□□□ 0.86
COL7A1-209ENST00000474432 MYBP10242 640 aa20.4■□□□□ 0.86
COL7A1-209ENST00000474432 GRM5P41594 1212 aa20.4■□□□□ 0.86
COL7A1-209ENST00000474432 RAD51AP2Q09MP3 1159 aa20.4■□□□□ 0.86
COL7A1-209ENST00000474432 DMP1Q13316 513 aaPredicted RBP20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms