RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	CDC5L	Q99459	802 aa	Known RBP	4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	MEGF9	Q9H1U4	602 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	TMEM140	Q9NV12	185 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	DDX20	Q9UHI6	824 aa	Known RBP	4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	DUSP10	Q9Y6W6	482 aa		4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	MYBBP1A	Q9BQG0	1328 aa	Known RBP	4.92	□□□□□ -1.62
PTCD3-209	ENST00000472044	KRTAP4-8	A0A0G2JLE6	195 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	CCDC194	A0A1B0GVG4	234 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	UBE2QL1	A1L167	161 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	TEX33	O43247	280 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	B3GALT2	O43825	422 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	UBXN7	O94888	489 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	ALOX15	P16050	662 aa	Predicted RBP	4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	DDC	P20711	480 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	RPS19	P39019	145 aa	Known RBP	4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	MAP2K6	P52564	334 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	AGFG1	P52594	562 aa	Known RBP	4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	USP14	P54578	494 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	APBA1	Q02410	837 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	LCNL1	Q6ZST4	164 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	ZGPAT	Q8N5A5	531 aa	Known RBP	4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	CAMKK1	Q8N5S9	505 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	ZBTB34	Q8NCN2	500 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	C3orf20	Q8ND61	904 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	CCHCR1	Q8TD31	782 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	FBXO41	Q8TF61	875 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	TTC17	Q96AE7	1141 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	RGMA	Q96B86	450 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	IL17RA	Q96F46	866 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	CLPTM1L	Q96KA5	538 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	FAM167A	Q96KS9	214 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	SAMD11	Q96NU1	681 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	CGRRF1	Q99675	332 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	PTPN18	Q99952	460 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	DPYSL5	Q9BPU6	564 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	TCF25	Q9BQ70	676 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	LRFN3	Q9BTN0	628 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	SENP6	Q9GZR1	1112 aa	Predicted RBP	4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	XYLT2	Q9H1B5	865 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	C12orf65	Q9H3J6	166 aa	Known RBP	4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	ARNT2	Q9HBZ2	717 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	DDX21	Q9NR30	783 aa	Known RBP eCLIP	4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	MAN1C1	Q9NR34	630 aa		4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044	FRMPD2	Q68DX3	1309 aa	Predicted RBP	4.91	□□□□□ -1.62
PTCD3-209	ENST00000472044		A0A088AWK7	358 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044		A0A1W2PRX2	142 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	FAM227A	F5H4B4	570 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	HOXA3	O43365	443 aa	Predicted RBP	4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	CDC14B	O60729	498 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	GPR32	O75388	356 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	ZBED1	O96006	694 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	FTL	P02792	175 aa	Predicted RBP	4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	KRT18	P05783	430 aa	Known RBP	4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	TRIM27	P14373	513 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	BMP7	P18075	431 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	PTPN7	P35236	360 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	CTXN1	P60606	82 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	PURA	Q00577	322 aa	Known RBP	4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	TLE1	Q04724	770 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	NOG	Q13253	232 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	GALE	Q14376	348 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	ANO6	Q4KMQ2	910 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	OTUD7B	Q6GQQ9	843 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	FAM111B	Q6SJ93	734 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	RSPH3	Q86UC2	560 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	KIAA0319L	Q8IZA0	1049 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	REPS2	Q8NFH8	660 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	PPP1R35	Q8TAP8	253 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	FEZF2	Q8TBJ5	459 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	MDM1	Q8TC05	714 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	CDK5RAP3	Q96JB5	506 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	SARG	Q9BW04	601 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	KCNH6	Q9H252	994 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	FAM204A	Q9H8W3	233 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	MOCS1	Q9NZB8	636 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	FAM30A	Q9NZY2	134 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	AJAP1	Q9UKB5	411 aa	Predicted RBP	4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	STXBP5L	Q9Y2K9	1186 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	ZMYM3	Q14202	1370 aa		4.9	□□□□□ -1.63
PTCD3-209	ENST00000472044	OTOL1	A6NHN0	477 aa	Predicted RBP	4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044		A6NNZ2	444 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	WNT10B	O00744	389 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	PJA2	O43164	708 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	PLAT	P00750	562 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	MYL1	P05976	194 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	INHBB	P09529	407 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	FTH1P19	P0C7X4	201 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	SYN1	P17600	705 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	HTR1B	P28222	390 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	PCSK1	P29120	753 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	CNR2	P34972	360 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	NKX6-1	P78426	367 aa	Predicted RBP	4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	PTH1R	Q03431	593 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	KHDC1	Q4VXA5	237 aa	Known RBP	4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	MFSD14B	Q5SR56	506 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	MFSD5	Q6N075	450 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	SLC4A10	Q6U841	1118 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	DOK3	Q7L591	496 aa		4.89	□□□□□ -1.63
PTCD3-209	ENST00000472044	TAX1BP1	Q86VP1	789 aa		4.89	□□□□□ -1.63

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