RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 TTC38Q5R3I4 469 aa23.28■■□□□ 1.32
COL9A3-207ENST00000467819 PADI6Q6TGC4 694 aa23.28■■□□□ 1.32
COL9A3-207ENST00000467819 IRF2BPLQ9H1B7 796 aa23.28■■□□□ 1.32
COL9A3-207ENST00000467819 WDR6Q9NNW5 1121 aaKnown RBP23.28■■□□□ 1.32
COL9A3-207ENST00000467819 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP23.28■■□□□ 1.32
COL9A3-207ENST00000467819 SNTG2Q9NY99 539 aa23.28■■□□□ 1.32
COL9A3-207ENST00000467819 CASTOR2A6NHX0 329 aa23.27■■□□□ 1.32
COL9A3-207ENST00000467819 TGM5O43548 720 aa23.27■■□□□ 1.32
COL9A3-207ENST00000467819 CYP11B2P19099 503 aa23.27■■□□□ 1.32
COL9A3-207ENST00000467819 NUBP1P53384 320 aa23.27■■□□□ 1.32
COL9A3-207ENST00000467819 ORC2Q13416 577 aaPredicted RBP23.27■■□□□ 1.32
COL9A3-207ENST00000467819 PRPF4BQ13523 1007 aaKnown RBP23.27■■□□□ 1.32
COL9A3-207ENST00000467819 HSP90AA2PQ14568 343 aaPredicted RBP23.27■■□□□ 1.32
COL9A3-207ENST00000467819 MAPK6Q16659 721 aa23.27■■□□□ 1.32
COL9A3-207ENST00000467819 ASTLQ6HA08 431 aaPredicted RBP23.27■■□□□ 1.32
COL9A3-207ENST00000467819 FLCNQ8NFG4 579 aa23.27■■□□□ 1.32
COL9A3-207ENST00000467819 DEPTORQ8TB45 409 aa23.27■■□□□ 1.32
COL9A3-207ENST00000467819 FOXP1Q9H334 677 aaPredicted RBP23.27■■□□□ 1.32
COL9A3-207ENST00000467819 RECQL4O94761 1208 aa23.26■■□□□ 1.31
COL9A3-207ENST00000467819 EDN1P05305 212 aa23.26■■□□□ 1.31
COL9A3-207ENST00000467819 NAMPTP43490 491 aa23.26■■□□□ 1.31
COL9A3-207ENST00000467819 TUSC3Q13454 348 aa23.26■■□□□ 1.31
COL9A3-207ENST00000467819 ERICH6BQ5W0A0 696 aa23.26■■□□□ 1.31
COL9A3-207ENST00000467819 PRSS55Q6UWB4 352 aaPredicted RBP23.26■■□□□ 1.31
COL9A3-207ENST00000467819 CYP26C1Q6V0L0 522 aa23.26■■□□□ 1.31
COL9A3-207ENST00000467819 NOSTRINQ8IVI9 506 aa23.26■■□□□ 1.31
COL9A3-207ENST00000467819 STAMQ92783 540 aa23.26■■□□□ 1.31
COL9A3-207ENST00000467819 ZNF707Q96C28 371 aaPredicted RBP23.26■■□□□ 1.31
COL9A3-207ENST00000467819 ADPGKQ9BRR6 497 aa23.26■■□□□ 1.31
COL9A3-207ENST00000467819 LLPHQ9BRT6 129 aaKnown RBP23.26■■□□□ 1.31
COL9A3-207ENST00000467819 PLEKHA4Q9H4M7 779 aa23.26■■□□□ 1.31
COL9A3-207ENST00000467819 PIDD1Q9HB75 910 aa23.26■■□□□ 1.31
COL9A3-207ENST00000467819 POLD4Q9HCU8 107 aa23.26■■□□□ 1.31
COL9A3-207ENST00000467819 FNIP2Q9P278 1114 aa23.26■■□□□ 1.31
COL9A3-207ENST00000467819 FBXL21Q9UKT6 434 aa23.26■■□□□ 1.31
COL9A3-207ENST00000467819 DUSP12Q9UNI6 340 aa23.26■■□□□ 1.31
COL9A3-207ENST00000467819 SF3B1O75533 1304 aaKnown RBP eCLIP23.26■■□□□ 1.31
COL9A3-207ENST00000467819 PTGESO14684 152 aa23.25■■□□□ 1.31
COL9A3-207ENST00000467819 CCT6AP40227 531 aaKnown RBP23.25■■□□□ 1.31
COL9A3-207ENST00000467819 NBR1Q14596 966 aa23.25■■□□□ 1.31
COL9A3-207ENST00000467819 RTP2Q5QGT7 225 aa23.25■■□□□ 1.31
COL9A3-207ENST00000467819 HAUS3Q68CZ6 603 aa23.25■■□□□ 1.31
COL9A3-207ENST00000467819 FAM184AQ8NB25 1140 aa23.25■■□□□ 1.31
COL9A3-207ENST00000467819 HDAC7Q8WUI4 952 aa23.25■■□□□ 1.31
COL9A3-207ENST00000467819 RSAD2Q8WXG1 361 aa23.25■■□□□ 1.31
COL9A3-207ENST00000467819 MYADMQ96S97 322 aa23.25■■□□□ 1.31
COL9A3-207ENST00000467819 KIFC3Q9BVG8 833 aa23.25■■□□□ 1.31
COL9A3-207ENST00000467819 RHOBTB2Q9BYZ6 727 aa23.25■■□□□ 1.31
COL9A3-207ENST00000467819 CCDC113Q9H0I3 377 aa23.25■■□□□ 1.31
COL9A3-207ENST00000467819 NT5C3AQ9H0P0 336 aa23.25■■□□□ 1.31
COL9A3-207ENST00000467819 CXCL16Q9H2A7 254 aa23.25■■□□□ 1.31
COL9A3-207ENST00000467819 IGSF9Q9P2J2 1179 aa23.25■■□□□ 1.31
COL9A3-207ENST00000467819 ACKR2O00590 384 aa23.24■■□□□ 1.31
COL9A3-207ENST00000467819 NARSO43776 548 aaKnown RBP23.24■■□□□ 1.31
COL9A3-207ENST00000467819 KIF4AO95239 1232 aa23.24■■□□□ 1.31
COL9A3-207ENST00000467819 THP07101 528 aa23.24■■□□□ 1.31
COL9A3-207ENST00000467819 RBM25P49756 843 aaKnown RBP23.24■■□□□ 1.31
COL9A3-207ENST00000467819 CREMQ03060 361 aa23.24■■□□□ 1.31
COL9A3-207ENST00000467819 PPP2R5AQ15172 486 aa23.24■■□□□ 1.31
COL9A3-207ENST00000467819 ECM1Q16610 540 aa23.24■■□□□ 1.31
COL9A3-207ENST00000467819 EEF1DP3Q658K8 133 aa23.24■■□□□ 1.31
COL9A3-207ENST00000467819 CWF19L1Q69YN2 538 aaKnown RBP23.24■■□□□ 1.31
COL9A3-207ENST00000467819 CEP57Q86XR8 500 aa23.24■■□□□ 1.31
COL9A3-207ENST00000467819 GPR65Q8IYL9 337 aa23.24■■□□□ 1.31
COL9A3-207ENST00000467819 FBXO18Q8NFZ0 1043 aa23.24■■□□□ 1.31
COL9A3-207ENST00000467819 GDAQ9Y2T3 454 aa23.24■■□□□ 1.31
COL9A3-207ENST00000467819 GFRA3O60609 400 aa23.23■■□□□ 1.31
COL9A3-207ENST00000467819 CLCN5P51795 746 aa23.23■■□□□ 1.31
COL9A3-207ENST00000467819 HMGN5P82970 282 aaKnown RBP23.23■■□□□ 1.31
COL9A3-207ENST00000467819 FAM171A1Q5VUB5 890 aa23.23■■□□□ 1.31
COL9A3-207ENST00000467819 LILRA6Q6PI73 481 aa23.23■■□□□ 1.31
COL9A3-207ENST00000467819 IFT74Q96LB3 600 aa23.23■■□□□ 1.31
COL9A3-207ENST00000467819 BHMT2Q9H2M3 363 aa23.23■■□□□ 1.31
COL9A3-207ENST00000467819 ZDHHC7Q9NXF8 308 aa23.23■■□□□ 1.31
COL9A3-207ENST00000467819 NOL7Q9UMY1 257 aaKnown RBP23.23■■□□□ 1.31
COL9A3-207ENST00000467819 MYH11P35749 1972 aa23.22■■□□□ 1.31
COL9A3-207ENST00000467819 MUTP22033 750 aa23.22■■□□□ 1.31
COL9A3-207ENST00000467819 FXR2P51116 673 aaKnown RBP eCLIP23.22■■□□□ 1.31
COL9A3-207ENST00000467819 GET4Q7L5D6 327 aaPredicted RBP23.22■■□□□ 1.31
COL9A3-207ENST00000467819 SIX5Q8N196 739 aa23.22■■□□□ 1.31
COL9A3-207ENST00000467819 ZSCAN31Q96LW9 406 aaPredicted RBP23.22■■□□□ 1.31
COL9A3-207ENST00000467819 TTPALQ9BTX7 342 aa23.22■■□□□ 1.31
COL9A3-207ENST00000467819 PRKD2Q9BZL6 878 aa23.22■■□□□ 1.31
COL9A3-207ENST00000467819 LRWD1Q9UFC0 647 aa23.22■■□□□ 1.31
COL9A3-207ENST00000467819 KIAA1024Q9UPX6 916 aa23.22■■□□□ 1.31
COL9A3-207ENST00000467819 DMDP11532 3685 aa23.22■■□□□ 1.31
COL9A3-207ENST00000467819 CITO14578 2027 aa23.21■■□□□ 1.31
COL9A3-207ENST00000467819 C1RP00736 705 aa23.21■■□□□ 1.31
COL9A3-207ENST00000467819 CFHP08603 1231 aa23.21■■□□□ 1.31
COL9A3-207ENST00000467819 TRAPPC10P48553 1259 aa23.21■■□□□ 1.31
COL9A3-207ENST00000467819 NAB2Q15742 525 aa23.21■■□□□ 1.31
COL9A3-207ENST00000467819 PSMD5Q16401 504 aa23.21■■□□□ 1.31
COL9A3-207ENST00000467819 DCAF4L1Q3SXM0 396 aa23.21■■□□□ 1.31
COL9A3-207ENST00000467819 C4orf32Q8N8J7 132 aa23.21■■□□□ 1.31
COL9A3-207ENST00000467819 PIK3R5Q8WYR1 880 aa23.21■■□□□ 1.31
COL9A3-207ENST00000467819 EPS15L1Q9UBC2 864 aa23.21■■□□□ 1.31
COL9A3-207ENST00000467819 MYH15Q9Y2K3 1946 aa23.21■■□□□ 1.31
COL9A3-207ENST00000467819 PI15O43692 258 aa23.2■■□□□ 1.3
COL9A3-207ENST00000467819 ST18O60284 1047 aa23.2■■□□□ 1.3
COL9A3-207ENST00000467819 ZMYND10O75800 440 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms