RNA–Protein interactions for RNA: ENST00000467272.6

UBR4-211, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 5

Gene UBR4, Length 891 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-211	ENST00000467272	ZNF274	Q96GC6	653 aa	Predicted RBP	13.58	□□□□□ -0.24
UBR4-211	ENST00000467272	CPB2	Q96IY4	423 aa		13.58	□□□□□ -0.24
UBR4-211	ENST00000467272	YTHDC1	Q96MU7	727 aa	Known RBP	13.58	□□□□□ -0.24
UBR4-211	ENST00000467272	PAAF1	Q9BRP4	392 aa		13.58	□□□□□ -0.24
UBR4-211	ENST00000467272	PHF20	Q9BVI0	1012 aa		13.58	□□□□□ -0.24
UBR4-211	ENST00000467272	ZSWIM6	Q9HCJ5	1215 aa		13.58	□□□□□ -0.24
UBR4-211	ENST00000467272	MTCL1	Q9Y4B5	1905 aa	Known RBP	13.57	□□□□□ -0.24
UBR4-211	ENST00000467272	STK25	O00506	426 aa		13.57	□□□□□ -0.24
UBR4-211	ENST00000467272	B4GALT5	O43286	388 aa		13.57	□□□□□ -0.24
UBR4-211	ENST00000467272	GCFC2	P16383	781 aa	Known RBP	13.57	□□□□□ -0.24
UBR4-211	ENST00000467272	GLRA2	P23416	452 aa		13.57	□□□□□ -0.24
UBR4-211	ENST00000467272	FSHR	P23945	695 aa		13.57	□□□□□ -0.24
UBR4-211	ENST00000467272	PRKCQ	Q04759	706 aa		13.57	□□□□□ -0.24
UBR4-211	ENST00000467272	SSRP1	Q08945	709 aa	Known RBP	13.57	□□□□□ -0.24
UBR4-211	ENST00000467272	GRIK3	Q13003	919 aa		13.57	□□□□□ -0.24
UBR4-211	ENST00000467272	RSPO2	Q6UXX9	243 aa	Predicted RBP	13.57	□□□□□ -0.24
UBR4-211	ENST00000467272	ST13P5	Q8NFI4	369 aa	Predicted RBP	13.57	□□□□□ -0.24
UBR4-211	ENST00000467272	FGF13	Q92913	245 aa		13.57	□□□□□ -0.24
UBR4-211	ENST00000467272	DYDC2	Q96IM9	177 aa		13.57	□□□□□ -0.24
UBR4-211	ENST00000467272	SHD	Q96IW2	340 aa		13.57	□□□□□ -0.24
UBR4-211	ENST00000467272	ZSWIM4	Q9H7M6	989 aa		13.57	□□□□□ -0.24
UBR4-211	ENST00000467272	PTGES	O14684	152 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	SPTLC1	O15269	473 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	ADAM12	O43184	909 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	NR1I2	O75469	434 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	ERLIN2	O94905	339 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	TDGF1	P13385	188 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	AKAP5	P24588	427 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	NTHL1	P78549	312 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	SNW1	Q13573	536 aa	Known RBP	13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	HSP90AA2P	Q14568	343 aa	Predicted RBP	13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	RSPO4	Q2I0M5	234 aa	Predicted RBP	13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	SLC44A4	Q53GD3	710 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	EARS2	Q5JPH6	523 aa	Known RBP	13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	SLC27A1	Q6PCB7	646 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	PRSS55	Q6UWB4	352 aa	Predicted RBP	13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	PPP4R3CP	Q6ZMV5	832 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	RUFY3	Q7L099	469 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	OTUD6A	Q7L8S5	288 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	GRASP	Q7Z6J2	395 aa	Predicted RBP	13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	NEK8	Q86SG6	692 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	TRIM22	Q8IYM9	498 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	ITFG1	Q8TB96	612 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	RABGGTA	Q92696	567 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	MTR	Q99707	1265 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	CXCL16	Q9H2A7	254 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	EPC1	Q9H2F5	836 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	PIDD1	Q9HB75	910 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	CACNG4	Q9UBN1	327 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	KCNJ14	Q9UNX9	436 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	PCDHGA2	Q9Y5H1	932 aa		13.56	□□□□□ -0.24
UBR4-211	ENST00000467272	MAGEA9	P43362	315 aa		13.55	□□□□□ -0.24
UBR4-211	ENST00000467272	RPS9	P46781	194 aa	Known RBP	13.55	□□□□□ -0.24
UBR4-211	ENST00000467272	TUSC3	Q13454	348 aa		13.55	□□□□□ -0.24
UBR4-211	ENST00000467272	CTTN	Q14247	550 aa	Known RBP	13.55	□□□□□ -0.24
UBR4-211	ENST00000467272	MLF2	Q15773	248 aa	Predicted RBP	13.55	□□□□□ -0.24
UBR4-211	ENST00000467272	XKR9	Q5GH70	373 aa		13.55	□□□□□ -0.24
UBR4-211	ENST00000467272	VARS2	Q5ST30	1063 aa	Known RBP	13.55	□□□□□ -0.24
UBR4-211	ENST00000467272	CDCA2	Q69YH5	1023 aa	Predicted RBP	13.55	□□□□□ -0.24
UBR4-211	ENST00000467272	CD300LG	Q6UXG3	332 aa		13.55	□□□□□ -0.24
UBR4-211	ENST00000467272	MAMSTR	Q6ZN01	415 aa		13.55	□□□□□ -0.24
UBR4-211	ENST00000467272	POTED	Q86YR6	584 aa		13.55	□□□□□ -0.24
UBR4-211	ENST00000467272	OXER1	Q8TDS5	423 aa		13.55	□□□□□ -0.24
UBR4-211	ENST00000467272	TNFRSF25	Q93038	417 aa		13.55	□□□□□ -0.24
UBR4-211	ENST00000467272	TTPAL	Q9BTX7	342 aa		13.55	□□□□□ -0.24
UBR4-211	ENST00000467272	FZD8	Q9H461	694 aa		13.55	□□□□□ -0.24
UBR4-211	ENST00000467272	LTB4R2	Q9NPC1	389 aa		13.55	□□□□□ -0.24
UBR4-211	ENST00000467272	PRMT8	Q9NR22	394 aa	Predicted RBP	13.55	□□□□□ -0.24
UBR4-211	ENST00000467272	ANKEF1	Q9NU02	776 aa		13.55	□□□□□ -0.24
UBR4-211	ENST00000467272	KCNH3	Q9ULD8	1083 aa		13.55	□□□□□ -0.24
UBR4-211	ENST00000467272	NOTCH4	Q99466	2003 aa		13.55	□□□□□ -0.24
UBR4-211	ENST00000467272	SF3B1	O75533	1304 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
UBR4-211	ENST00000467272	PATJ	Q8NI35	1801 aa		13.55	□□□□□ -0.24
UBR4-211	ENST00000467272	DOCK6	Q96HP0	2047 aa		13.54	□□□□□ -0.24
UBR4-211	ENST00000467272	TTLL13P	A6NNM8	815 aa		13.54	□□□□□ -0.24
UBR4-211	ENST00000467272	INO80B-WBP1	J3KQ70	363 aa		13.54	□□□□□ -0.24
UBR4-211	ENST00000467272	KIN	O60870	393 aa	Known RBP	13.54	□□□□□ -0.24
UBR4-211	ENST00000467272	DGAT1	O75907	488 aa		13.54	□□□□□ -0.24
UBR4-211	ENST00000467272	KIF4A	O95239	1232 aa		13.54	□□□□□ -0.24
UBR4-211	ENST00000467272	IGFBP6	P24592	240 aa	Predicted RBP	13.54	□□□□□ -0.24
UBR4-211	ENST00000467272	PSMA5	P28066	241 aa		13.54	□□□□□ -0.24
UBR4-211	ENST00000467272	RAB33A	Q14088	237 aa		13.54	□□□□□ -0.24
UBR4-211	ENST00000467272	TFDP1	Q14186	410 aa		13.54	□□□□□ -0.24
UBR4-211	ENST00000467272	FAM187B	Q17R55	369 aa		13.54	□□□□□ -0.24
UBR4-211	ENST00000467272	UVSSA	Q2YD98	709 aa		13.54	□□□□□ -0.24
UBR4-211	ENST00000467272	MTSS1L	Q765P7	747 aa		13.54	□□□□□ -0.24
UBR4-211	ENST00000467272	RTL10	Q7L3V2	364 aa		13.54	□□□□□ -0.24
UBR4-211	ENST00000467272	GLYCTK	Q8IVS8	523 aa		13.54	□□□□□ -0.24
UBR4-211	ENST00000467272	NPAS3	Q8IXF0	933 aa		13.54	□□□□□ -0.24
UBR4-211	ENST00000467272	AVEN	Q9NQS1	362 aa	Predicted RBP	13.54	□□□□□ -0.24
UBR4-211	ENST00000467272	ARID2	Q68CP9	1835 aa		13.54	□□□□□ -0.24
UBR4-211	ENST00000467272	MAP1B	P46821	2468 aa	Known RBP	13.54	□□□□□ -0.24
UBR4-211	ENST00000467272	FAM170B	A6NMN3	283 aa		13.53	□□□□□ -0.24
UBR4-211	ENST00000467272	EPB41L2	O43491	1005 aa	Known RBP	13.53	□□□□□ -0.24
UBR4-211	ENST00000467272	TADA2A	O75478	443 aa		13.53	□□□□□ -0.24
UBR4-211	ENST00000467272	NPTXR	O95502	500 aa		13.53	□□□□□ -0.24
UBR4-211	ENST00000467272	C8A	P07357	584 aa		13.53	□□□□□ -0.24
UBR4-211	ENST00000467272	FGFR3	P22607	806 aa		13.53	□□□□□ -0.24
UBR4-211	ENST00000467272	RFX1	P22670	979 aa		13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms