RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 MYZAPP0CAP1 466 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 BAG6P46379 1132 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 ACTR2P61160 394 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 PRKCEQ02156 737 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 DCAF15Q66K64 600 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 LMBRD2Q68DH5 695 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-217ENST00000466159 DUPD1Q68J44 220 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 ZNF564Q8TBZ8 553 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-217ENST00000466159 TMC2Q8TDI7 906 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 DDX1Q92499 740 aaKnown RBP9.62□□□□□ -0.87
SYNE1-217ENST00000466159 BICD1Q96G01 975 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 ERP44Q9BS26 406 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 LRRC4CQ9HCJ2 640 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 A1CFQ9NQ94 594 aaKnown RBP9.62□□□□□ -0.87
SYNE1-217ENST00000466159 CYP26B1Q9NR63 512 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 CYP39A1Q9NYL5 469 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 SLC9A2Q9UBY0 812 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 ZNF112Q9UJU3 913 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 MYH9P35579 1960 aaKnown RBP9.62□□□□□ -0.87
SYNE1-217ENST00000466159 PHIPQ8WWQ0 1821 aa9.62□□□□□ -0.87
SYNE1-217ENST00000466159 SYNGAP1Q96PV0 1343 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 TCRBV7S2A1N4TA0A589 114 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 GOLGA6L10A6NI86 522 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 MYO1FO00160 1098 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 GRIN3BO60391 1043 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 DGAT1O75907 488 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 PYGMP11217 842 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 KRT5P13647 590 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 HPDP32754 393 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-217ENST00000466159 PDE6CP51160 858 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 CDR2Q01850 454 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 SP2Q02086 613 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 MTERF2Q49AM1 385 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 CYFIP1Q7L576 1253 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 JAMLQ86YT9 394 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 GPD1LQ8N335 351 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 PRELID2Q8N945 189 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 C1orf131Q8NDD1 294 aaKnown RBP9.61□□□□□ -0.87
SYNE1-217ENST00000466159 ZNF516Q92618 1163 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 CD101Q93033 1021 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 ZNF653Q96CK0 615 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 RPS6KC1Q96S38 1066 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 RAB17Q9H0T7 212 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 C17orf75Q9HAS0 396 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 AS3MTQ9HBK9 375 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 FEZ2Q9UHY8 353 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-217ENST00000466159 ADAMTS5Q9UNA0 930 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 SNX24Q9Y343 169 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 MTA2O94776 668 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 CYP1A2P05177 515 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 FSTL1Q12841 308 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 SF3B2Q13435 895 aaKnown RBP9.61□□□□□ -0.87
SYNE1-217ENST00000466159 LLGL1Q15334 1064 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 BRDTQ58F21 947 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-217ENST00000466159 EMC10Q5UCC4 262 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 ANGEL2Q5VTE6 544 aaKnown RBP9.61□□□□□ -0.87
SYNE1-217ENST00000466159 TTC27Q6P3X3 843 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 ABHD15Q6UXT9 468 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 MCPH1Q8NEM0 835 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 FMO2Q99518 471 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 POLR3FQ9H1D9 316 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-217ENST00000466159 ZDHHC18Q9NUE0 388 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 BCCIPQ9P287 314 aaKnown RBP eCLIP9.61□□□□□ -0.87
SYNE1-217ENST00000466159 ATP8A1Q9Y2Q0 1164 aa9.61□□□□□ -0.87
SYNE1-217ENST00000466159 SPOPO43791 374 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 PEX10O60683 326 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 PHF2O75151 1096 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 LSP1P33241 339 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 PTGIRP43119 386 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 OAZ1P54368 228 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 PLTPP55058 493 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 WNT7BP56706 349 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 MTMR3Q13615 1198 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 PPP2R5EQ16537 467 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 ZNF526Q8TF50 670 aaPredicted RBP9.6□□□□□ -0.87
SYNE1-217ENST00000466159 MAGOHBQ96A72 148 aaKnown RBP9.6□□□□□ -0.87
SYNE1-217ENST00000466159 WNT8AQ9H1J5 351 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 ATP6V0A4Q9HBG4 840 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 ARHGAP28Q9P2N2 729 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 GTF3C4Q9UKN8 822 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 FAM187AA6NFU0 413 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 SPATA31C2B4DYI2 1134 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 KIAA0391O15091 583 aaKnown RBP9.6□□□□□ -0.87
SYNE1-217ENST00000466159 DKC1O60832 514 aaKnown RBP eCLIP9.6□□□□□ -0.87
SYNE1-217ENST00000466159 ATP4AP20648 1035 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 GARTP22102 1010 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 CTNNA2P26232 953 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 GTF2H1P32780 548 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 MDH1P40925 334 aaKnown RBP9.6□□□□□ -0.87
SYNE1-217ENST00000466159 DHX34Q14147 1143 aaKnown RBP9.6□□□□□ -0.87
SYNE1-217ENST00000466159 SEL1L2Q5TEA6 688 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 ACAD10Q6JQN1 1059 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 CATSPERGQ6ZRH7 1159 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 PHLDB2Q86SQ0 1253 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 USP37Q86T82 979 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 TMEM143Q96AN5 459 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 IFT74Q96LB3 600 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 TEX13BQ9BXU2 312 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 TXLNGYQ9BZA5 131 aa9.6□□□□□ -0.87
SYNE1-217ENST00000466159 ACAD9Q9H845 621 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms