RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 ODR4Q5SWX8 454 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 TMC6Q7Z403 805 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 CNGA4Q8IV77 575 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 KIAA0319LQ8IZA0 1049 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 FIBCD1Q8N539 461 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 KIAA1524Q8TCG1 905 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 TMEM40Q8WWA1 233 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 BBXQ8WY36 941 aaPredicted RBP12.88□□□□□ -0.35
USP54-209ENST00000464635 MRPL38Q96DV4 380 aaKnown RBP12.88□□□□□ -0.35
USP54-209ENST00000464635 CNOT6LQ96LI5 555 aaKnown RBP12.88□□□□□ -0.35
USP54-209ENST00000464635 SAMD11Q96NU1 681 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 PANX2Q96RD6 677 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 DHX33Q9H6R0 707 aaKnown RBP12.88□□□□□ -0.35
USP54-209ENST00000464635 CYP26B1Q9NR63 512 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 GINS2Q9Y248 185 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 DAAM1Q9Y4D1 1078 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 ARID2Q68CP9 1835 aa12.88□□□□□ -0.35
USP54-209ENST00000464635 H3BNC9 293 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 ZBTB39O15060 712 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 STX10O60499 249 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 MGEA5O60502 916 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 DGKIO75912 1065 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 OATP04181 439 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 TUBB4AP04350 444 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 IBSPP21815 317 aaPredicted RBP12.87□□□□□ -0.35
USP54-209ENST00000464635 CLCN1P35523 988 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 PAK2Q13177 524 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 ADAM9Q13443 819 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 UGCGQ16739 394 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 AAK1Q2M2I8 961 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 ZNF484Q5JVG2 852 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 SMYD5Q6GMV2 418 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 HS2ST1Q7LGA3 356 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 CRIPAKQ8N1N5 446 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 CACTINQ8WUQ7 758 aaKnown RBP12.87□□□□□ -0.35
USP54-209ENST00000464635 HPS3Q969F9 1004 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 ZNF689Q96CS4 500 aaPredicted RBP12.87□□□□□ -0.35
USP54-209ENST00000464635 CEP170P1Q96L14 293 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 CEP89Q96ST8 783 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 GBP3Q9H0R5 595 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 UBE2ZQ9H832 354 aaPredicted RBP12.87□□□□□ -0.35
USP54-209ENST00000464635 ERVK-5Q9HDB9 667 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 DMAC2Q9NW81 257 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 EXOC7Q9UPT5 735 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 NOC2LQ9Y3T9 749 aaKnown RBP12.87□□□□□ -0.35
USP54-209ENST00000464635 SQORQ9Y6N5 450 aa12.87□□□□□ -0.35
USP54-209ENST00000464635 A0A1W2PQJ5 194 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 KIAA0391O15091 583 aaKnown RBP12.86□□□□□ -0.35
USP54-209ENST00000464635 TEX33O43247 280 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 CCP110O43303 1012 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 CSPG5O95196 566 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 GCNT3O95395 438 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 VTNP04004 478 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 HOXD13P35453 343 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 MTIF2P46199 727 aaKnown RBP12.86□□□□□ -0.35
USP54-209ENST00000464635 CLCN3P51790 818 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 PRKCEQ02156 737 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 BTG3Q14201 252 aaPredicted RBP12.86□□□□□ -0.35
USP54-209ENST00000464635 PPP2R5AQ15172 486 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 KIZQ2M2Z5 673 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 VWA3BQ502W6 1294 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 PAN2Q504Q3 1202 aaKnown RBP12.86□□□□□ -0.35
USP54-209ENST00000464635 MIIPQ5JXC2 388 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 FKBP15Q5T1M5 1219 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 PPFIBP1Q86W92 1011 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 TRIM59Q8IWR1 403 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 NME8Q8N427 588 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 ACCSQ96QU6 501 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 KCNF1Q9H3M0 494 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 NDST4Q9H3R1 872 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 ZHX3Q9H4I2 956 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 ATP6V0A4Q9HBG4 840 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 SPTLC3Q9NUV7 552 aa12.86□□□□□ -0.35
USP54-209ENST00000464635 MRPL42Q9Y6G3 142 aaKnown RBP12.86□□□□□ -0.35
USP54-209ENST00000464635 GTPBP10A4D1E9 387 aaKnown RBP12.85□□□□□ -0.35
USP54-209ENST00000464635 AKR1B15C9JRZ8 316 aaPredicted RBP12.85□□□□□ -0.35
USP54-209ENST00000464635 GRM6O15303 877 aa12.85□□□□□ -0.35
USP54-209ENST00000464635 PMM2O15305 246 aa12.85□□□□□ -0.35
USP54-209ENST00000464635 TGFB1I1O43294 461 aa12.85□□□□□ -0.35
USP54-209ENST00000464635 KCNA5P22460 613 aa12.85□□□□□ -0.35
USP54-209ENST00000464635 CASP5P51878 434 aa12.85□□□□□ -0.35
USP54-209ENST00000464635 UBXN1Q04323 297 aa12.85□□□□□ -0.35
USP54-209ENST00000464635 POU5F1BQ06416 359 aa12.85□□□□□ -0.35
USP54-209ENST00000464635 TBC1D8BQ0IIM8 1120 aa12.85□□□□□ -0.35
USP54-209ENST00000464635 NFX1Q12986 1120 aaKnown RBP12.85□□□□□ -0.35
USP54-209ENST00000464635 DMP1Q13316 513 aaPredicted RBP12.85□□□□□ -0.35
USP54-209ENST00000464635 TIGD5Q53EQ6 642 aa12.85□□□□□ -0.35
USP54-209ENST00000464635 TCEAL5Q5H9L2 206 aa12.85□□□□□ -0.35
USP54-209ENST00000464635 ARMCX5Q6P1M9 558 aa12.85□□□□□ -0.35
USP54-209ENST00000464635 NPAS4Q8IUM7 802 aa12.85□□□□□ -0.35
USP54-209ENST00000464635 LRRC71Q8N4P6 559 aa12.85□□□□□ -0.35
USP54-209ENST00000464635 CLP1Q92989 425 aaKnown RBP12.85□□□□□ -0.35
USP54-209ENST00000464635 IFT74Q96LB3 600 aa12.85□□□□□ -0.35
USP54-209ENST00000464635 OSMRQ99650 979 aa12.85□□□□□ -0.35
USP54-209ENST00000464635 FTHL17Q9BXU8 183 aa12.85□□□□□ -0.35
USP54-209ENST00000464635 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.84□□□□□ -0.35
USP54-209ENST00000464635 IGKV6-21A0A0C4DH24 114 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 TMEM150BA6NC51 233 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 C5orf67F2Z3F1 127 aa12.84□□□□□ -0.35
USP54-209ENST00000464635 ASAP2O43150 1006 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms