RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 CLTAP09496 248 aa21.61■■□□□ 1.05
COL9A3-204ENST00000463487 PPM1AP35813 382 aa21.61■■□□□ 1.05
COL9A3-204ENST00000463487 BMPR1AP36894 532 aa21.61■■□□□ 1.05
COL9A3-204ENST00000463487 ALDH7A1P49419 539 aaKnown RBP21.61■■□□□ 1.05
COL9A3-204ENST00000463487 EPM2AIP1Q7L775 607 aaPredicted RBP21.61■■□□□ 1.05
COL9A3-204ENST00000463487 GOLGA5Q8TBA6 731 aa21.61■■□□□ 1.05
COL9A3-204ENST00000463487 C11orf84Q9BUA3 381 aaPredicted RBP21.61■■□□□ 1.05
COL9A3-204ENST00000463487 FGFBP2Q9BYJ0 223 aa21.61■■□□□ 1.05
COL9A3-204ENST00000463487 RNF39Q9H2S5 420 aa21.61■■□□□ 1.05
COL9A3-204ENST00000463487 TTYH1Q9H313 450 aaPredicted RBP21.61■■□□□ 1.05
COL9A3-204ENST00000463487 TBC1D13Q9NVG8 400 aa21.61■■□□□ 1.05
COL9A3-204ENST00000463487 CGNQ9P2M7 1197 aaKnown RBP21.61■■□□□ 1.05
COL9A3-204ENST00000463487 AGO2Q9UKV8 859 aaKnown RBP21.61■■□□□ 1.05
COL9A3-204ENST00000463487 MTUS1Q9ULD2 1270 aa21.61■■□□□ 1.05
COL9A3-204ENST00000463487 STYXL1Q9Y6J8 313 aa21.61■■□□□ 1.05
COL9A3-204ENST00000463487 LDHAP00338 332 aaKnown RBP21.6■■□□□ 1.05
COL9A3-204ENST00000463487 POMCP01189 267 aa21.6■■□□□ 1.05
COL9A3-204ENST00000463487 GARTP22102 1010 aa21.6■■□□□ 1.05
COL9A3-204ENST00000463487 OSTNP61366 133 aa21.6■■□□□ 1.05
COL9A3-204ENST00000463487 KCNA1Q09470 495 aa21.6■■□□□ 1.05
COL9A3-204ENST00000463487 GRIK3Q13003 919 aa21.6■■□□□ 1.05
COL9A3-204ENST00000463487 BMT2Q1RMZ1 405 aa21.6■■□□□ 1.05
COL9A3-204ENST00000463487 EPC2Q52LR7 807 aa21.6■■□□□ 1.05
COL9A3-204ENST00000463487 ARMCX5Q6P1M9 558 aa21.6■■□□□ 1.05
COL9A3-204ENST00000463487 FAM161BQ96MY7 647 aa21.6■■□□□ 1.05
COL9A3-204ENST00000463487 ZNF558Q96NG5 402 aa21.6■■□□□ 1.05
COL9A3-204ENST00000463487 C17orf80Q9BSJ5 609 aa21.6■■□□□ 1.05
COL9A3-204ENST00000463487 KLK14Q9P0G3 267 aa21.6■■□□□ 1.05
COL9A3-204ENST00000463487 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.6■■□□□ 1.05
COL9A3-204ENST00000463487 ZC3H11AO75152 810 aaKnown RBP eCLIP21.59■■□□□ 1.05
COL9A3-204ENST00000463487 SCNN1GP51170 649 aa21.59■■□□□ 1.05
COL9A3-204ENST00000463487 KNOP1Q1ED39 458 aaKnown RBP21.59■■□□□ 1.05
COL9A3-204ENST00000463487 SLC39A4Q6P5W5 647 aa21.59■■□□□ 1.05
COL9A3-204ENST00000463487 SCFD1Q8WVM8 642 aa21.59■■□□□ 1.05
COL9A3-204ENST00000463487 P2RX5Q93086 422 aa21.59■■□□□ 1.05
COL9A3-204ENST00000463487 ZFP42Q96MM3 310 aa21.59■■□□□ 1.05
COL9A3-204ENST00000463487 GAS2L1Q99501 681 aaPredicted RBP21.59■■□□□ 1.05
COL9A3-204ENST00000463487 CERS4Q9HA82 394 aa21.59■■□□□ 1.05
COL9A3-204ENST00000463487 PLEKHA5Q9HAU0 1116 aa21.59■■□□□ 1.05
COL9A3-204ENST00000463487 LMBRD1Q9NUN5 540 aa21.59■■□□□ 1.05
COL9A3-204ENST00000463487 ANKRD63C9JTQ0 380 aa21.58■■□□□ 1.05
COL9A3-204ENST00000463487 C5orf67F2Z3F1 127 aa21.58■■□□□ 1.05
COL9A3-204ENST00000463487 ARHGEF15O94989 841 aa21.58■■□□□ 1.05
COL9A3-204ENST00000463487 THP07101 528 aa21.58■■□□□ 1.05
COL9A3-204ENST00000463487 POU5F1Q01860 360 aaKnown RBP21.58■■□□□ 1.05
COL9A3-204ENST00000463487 STK4Q13043 487 aa21.58■■□□□ 1.05
COL9A3-204ENST00000463487 NELFCDQ8IXH7 590 aa21.58■■□□□ 1.05
COL9A3-204ENST00000463487 CEP120Q8N960 986 aa21.58■■□□□ 1.05
COL9A3-204ENST00000463487 COLGALT1Q8NBJ5 622 aa21.58■■□□□ 1.05
COL9A3-204ENST00000463487 KIAA0895Q8NCT3 520 aa21.58■■□□□ 1.05
COL9A3-204ENST00000463487 GLIS3Q8NEA6 775 aa21.58■■□□□ 1.05
COL9A3-204ENST00000463487 TMEM175Q9BSA9 504 aa21.58■■□□□ 1.05
COL9A3-204ENST00000463487 CWH43Q9H720 699 aa21.58■■□□□ 1.05
COL9A3-204ENST00000463487 RPF1Q9H9Y2 349 aaKnown RBP21.58■■□□□ 1.05
COL9A3-204ENST00000463487 SLC38A7Q9NVC3 462 aa21.58■■□□□ 1.05
COL9A3-204ENST00000463487 PCDHA5Q9Y5H7 936 aa21.58■■□□□ 1.05
COL9A3-204ENST00000463487 NLRC5Q86WI3 1866 aa21.58■■□□□ 1.04
COL9A3-204ENST00000463487 PPP1R2P41236 205 aa21.57■■□□□ 1.04
COL9A3-204ENST00000463487 KRT17Q04695 432 aa21.57■■□□□ 1.04
COL9A3-204ENST00000463487 PPP2R3AQ06190 1150 aa21.57■■□□□ 1.04
COL9A3-204ENST00000463487 KCNT2Q6UVM3 1135 aa21.57■■□□□ 1.04
COL9A3-204ENST00000463487 LRRC55Q6ZSA7 311 aa21.57■■□□□ 1.04
COL9A3-204ENST00000463487 CD302Q8IX05 232 aa21.57■■□□□ 1.04
COL9A3-204ENST00000463487 SPATA20Q8TB22 786 aa21.57■■□□□ 1.04
COL9A3-204ENST00000463487 SNX27Q96L92 541 aa21.57■■□□□ 1.04
COL9A3-204ENST00000463487 TSPAN18Q96SJ8 248 aa21.57■■□□□ 1.04
COL9A3-204ENST00000463487 KIAA1586Q9HCI6 787 aa21.57■■□□□ 1.04
COL9A3-204ENST00000463487 XPOTO43592 962 aaKnown RBP21.56■■□□□ 1.04
COL9A3-204ENST00000463487 MBD3O95983 291 aa21.56■■□□□ 1.04
COL9A3-204ENST00000463487 BCAR1P56945 870 aa21.56■■□□□ 1.04
COL9A3-204ENST00000463487 STIM1Q13586 685 aa21.56■■□□□ 1.04
COL9A3-204ENST00000463487 GRIN2CQ14957 1233 aa21.56■■□□□ 1.04
COL9A3-204ENST00000463487 PTPROQ16827 1216 aa21.56■■□□□ 1.04
COL9A3-204ENST00000463487 ZNF658Q5TYW1 1059 aaPredicted RBP21.56■■□□□ 1.04
COL9A3-204ENST00000463487 Q7L0L9 218 aa21.56■■□□□ 1.04
COL9A3-204ENST00000463487 GUF1Q8N442 669 aaKnown RBP21.56■■□□□ 1.04
COL9A3-204ENST00000463487 HAPLN2Q9GZV7 340 aa21.56■■□□□ 1.04
COL9A3-204ENST00000463487 PRDM12Q9H4Q4 367 aa21.56■■□□□ 1.04
COL9A3-204ENST00000463487 NRDE2Q9H7Z3 1164 aa21.56■■□□□ 1.04
COL9A3-204ENST00000463487 SPG21Q9NZD8 308 aa21.56■■□□□ 1.04
COL9A3-204ENST00000463487 STK39Q9UEW8 545 aa21.56■■□□□ 1.04
COL9A3-204ENST00000463487 LAMA2P24043 3122 aaKnown RBP21.56■■□□□ 1.04
COL9A3-204ENST00000463487 TISP43B9A030 160 aa21.55■■□□□ 1.04
COL9A3-204ENST00000463487 H3BNC9 293 aa21.55■■□□□ 1.04
COL9A3-204ENST00000463487 ALDH2P05091 517 aa21.55■■□□□ 1.04
COL9A3-204ENST00000463487 GPM6BQ13491 265 aa21.55■■□□□ 1.04
COL9A3-204ENST00000463487 SEZ6Q53EL9 994 aa21.55■■□□□ 1.04
COL9A3-204ENST00000463487 TMEM169Q96HH4 297 aa21.55■■□□□ 1.04
COL9A3-204ENST00000463487 NUP62CLQ9H1M0 184 aa21.55■■□□□ 1.04
COL9A3-204ENST00000463487 AGPAT3Q9NRZ7 376 aa21.55■■□□□ 1.04
COL9A3-204ENST00000463487 MTMR10Q9NXD2 777 aa21.55■■□□□ 1.04
COL9A3-204ENST00000463487 CNTN3Q9P232 1028 aa21.55■■□□□ 1.04
COL9A3-204ENST00000463487 PUF60Q9UHX1 559 aaKnown RBP21.55■■□□□ 1.04
COL9A3-204ENST00000463487 CPSF3Q9UKF6 684 aaKnown RBP21.55■■□□□ 1.04
COL9A3-204ENST00000463487 FAN1Q9Y2M0 1017 aa21.55■■□□□ 1.04
COL9A3-204ENST00000463487 CITO14578 2027 aa21.55■■□□□ 1.04
COL9A3-204ENST00000463487 TDRD15B5MCY1 1934 aaKnown RBP21.55■■□□□ 1.04
COL9A3-204ENST00000463487 CALUO43852 315 aaPredicted RBP21.54■■□□□ 1.04
COL9A3-204ENST00000463487 EXTL3O43909 919 aa21.54■■□□□ 1.04
COL9A3-204ENST00000463487 LINC00271P0C7V0 271 aa21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms