RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 PTGER2P43116 358 aa13.33□□□□□ -0.28
HDAC4-208ENST00000463007 MYL7Q01449 175 aa13.33□□□□□ -0.28
HDAC4-208ENST00000463007 SEL1L2Q5TEA6 688 aa13.33□□□□□ -0.28
HDAC4-208ENST00000463007 RINT1Q6NUQ1 792 aa13.33□□□□□ -0.28
HDAC4-208ENST00000463007 LLGL2Q6P1M3 1020 aa13.33□□□□□ -0.28
HDAC4-208ENST00000463007 HS2ST1Q7LGA3 356 aa13.33□□□□□ -0.28
HDAC4-208ENST00000463007 TLCD1Q96CP7 247 aa13.33□□□□□ -0.28
HDAC4-208ENST00000463007 DYDC2Q96IM9 177 aa13.33□□□□□ -0.28
HDAC4-208ENST00000463007 STRA6Q9BX79 667 aa13.33□□□□□ -0.28
HDAC4-208ENST00000463007 INTS2Q9H0H0 1204 aaKnown RBP13.33□□□□□ -0.28
HDAC4-208ENST00000463007 VPS33BQ9H267 617 aa13.33□□□□□ -0.28
HDAC4-208ENST00000463007 KDM4CQ9H3R0 1056 aa13.33□□□□□ -0.28
HDAC4-208ENST00000463007 LOC285556D6RIA3 1793 aa13.33□□□□□ -0.28
HDAC4-208ENST00000463007 SPAG7O75391 227 aa13.33□□□□□ -0.28
HDAC4-208ENST00000463007 LMNB1P20700 586 aa13.33□□□□□ -0.28
HDAC4-208ENST00000463007 MUTP22033 750 aa13.33□□□□□ -0.28
HDAC4-208ENST00000463007 PSEN1P49768 467 aa13.33□□□□□ -0.28
HDAC4-208ENST00000463007 EIF3BP55884 814 aaKnown RBP13.33□□□□□ -0.28
HDAC4-208ENST00000463007 EXOC3L1Q86VI1 746 aa13.33□□□□□ -0.28
HDAC4-208ENST00000463007 ERICH1Q86X53 443 aa13.33□□□□□ -0.28
HDAC4-208ENST00000463007 RTKN2Q8IZC4 609 aa13.33□□□□□ -0.28
HDAC4-208ENST00000463007 FRMPD4Q14CM0 1322 aa13.33□□□□□ -0.28
HDAC4-208ENST00000463007 KAT6AQ92794 2004 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 HSD17B4P51659 736 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 ZNF449Q6P9G9 518 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 RASGEF1CQ8N431 466 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 UBL4BQ8N7F7 174 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 C9orf72Q96LT7 481 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 TMEM237Q96Q45 408 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 GLIS2Q9BZE0 524 aaPredicted RBP13.32□□□□□ -0.28
HDAC4-208ENST00000463007 RGS17Q9UGC6 210 aaPredicted RBP13.32□□□□□ -0.28
HDAC4-208ENST00000463007 SLC16A3O15427 465 aaKnown RBP13.32□□□□□ -0.28
HDAC4-208ENST00000463007 MGRN1O60291 552 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 RXRBP28702 533 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 STX2P32856 288 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 CAP2P40123 477 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 SESN3P58005 492 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 POU5F1Q01860 360 aaKnown RBP13.32□□□□□ -0.28
HDAC4-208ENST00000463007 AUHQ13825 339 aaKnown RBP13.32□□□□□ -0.28
HDAC4-208ENST00000463007 WLSQ5T9L3 541 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 SLFN11Q7Z7L1 901 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 CCDC50Q8IVM0 306 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 TRIM6Q9C030 488 aaPredicted RBP13.32□□□□□ -0.28
HDAC4-208ENST00000463007 METTL14Q9HCE5 456 aaKnown RBP13.32□□□□□ -0.28
HDAC4-208ENST00000463007 GRHL1Q9NZI5 618 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 KCNG1Q9UIX4 513 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 ATP8B3O60423 1300 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 WDR81Q562E7 1941 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 EIF3DO15371 548 aaKnown RBP eCLIP13.32□□□□□ -0.286e-11■■■□□ 14.9
HDAC4-208ENST00000463007 RIPK2O43353 540 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 ZBTB48P10074 688 aaPredicted RBP13.32□□□□□ -0.28
HDAC4-208ENST00000463007 CHKAP35790 457 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 MMP13P45452 471 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 ARHGEF19Q8IW93 802 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 TMEM39BQ9GZU3 492 aa13.32□□□□□ -0.28
HDAC4-208ENST00000463007 C5orf60A6NFR6 353 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 CYP26A1O43174 497 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 SGPL1O95470 568 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 BRAFP15056 766 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 PRKCIP41743 596 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 JAM2P57087 298 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 TRAF1Q13077 416 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 C6orf118Q5T5N4 469 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 CCDC174Q6PII3 467 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 EMSYQ7Z589 1322 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 TTLL6Q8N841 843 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 RMDN2Q96LZ7 410 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 NAP1L3Q99457 506 aaPredicted RBP13.31□□□□□ -0.28
HDAC4-208ENST00000463007 STK33Q9BYT3 514 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 TRIM7Q9C029 511 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 NSRP1Q9H0G5 558 aaKnown RBP13.31□□□□□ -0.28
HDAC4-208ENST00000463007 CDC42EP4Q9H3Q1 356 aaKnown RBP13.31□□□□□ -0.28
HDAC4-208ENST00000463007 ZBTB12Q9Y330 459 aaPredicted RBP13.31□□□□□ -0.28
HDAC4-208ENST00000463007 PFASO15067 1338 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 TMEM150BA6NC51 233 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 RAD17O75943 681 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 CNGA2Q16280 664 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 AGBL3Q8NEM8 1001 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 TMEM174Q8WUU8 243 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 SPOCK2Q92563 424 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 YIPF3Q9GZM5 350 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 ETNK1Q9HBU6 452 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 A1CFQ9NQ94 594 aaKnown RBP13.31□□□□□ -0.28
HDAC4-208ENST00000463007 PHIPQ8WWQ0 1821 aa13.31□□□□□ -0.28
HDAC4-208ENST00000463007 BTNL10A8MVZ5 291 aa13.3□□□□□ -0.28
HDAC4-208ENST00000463007 PDHA1P08559 390 aa13.3□□□□□ -0.28
HDAC4-208ENST00000463007 TMEM253P0C7T8 217 aa13.3□□□□□ -0.28
HDAC4-208ENST00000463007 RARAP10276 462 aa13.3□□□□□ -0.28
HDAC4-208ENST00000463007 NQO1P15559 274 aaKnown RBP13.3□□□□□ -0.28
HDAC4-208ENST00000463007 VCAM1P19320 739 aa13.3□□□□□ -0.28
HDAC4-208ENST00000463007 DLGAP5Q15398 846 aa13.3□□□□□ -0.28
HDAC4-208ENST00000463007 CEP55Q53EZ4 464 aa13.3□□□□□ -0.28
HDAC4-208ENST00000463007 ARMC9Q7Z3E5 817 aa13.3□□□□□ -0.28
HDAC4-208ENST00000463007 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.3□□□□□ -0.281e-6■■■■■ 55.5
HDAC4-208ENST00000463007 TGS1Q96RS0 853 aaKnown RBP13.3□□□□□ -0.28
HDAC4-208ENST00000463007 AGPAT1Q99943 283 aa13.3□□□□□ -0.28
HDAC4-208ENST00000463007 CARD9Q9H257 536 aa13.3□□□□□ -0.28
HDAC4-208ENST00000463007 APEX2Q9UBZ4 518 aa13.3□□□□□ -0.28
HDAC4-208ENST00000463007 DOCK1Q14185 1865 aa13.3□□□□□ -0.28
HDAC4-208ENST00000463007 THAP12O43422 761 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms