RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 PADI6Q6TGC4 694 aa17■□□□□ 0.31
SKA3-204ENST00000462482 B3GALT6Q96L58 329 aa17■□□□□ 0.31
SKA3-204ENST00000462482 IFT74Q96LB3 600 aa17■□□□□ 0.31
SKA3-204ENST00000462482 TTPALQ9BTX7 342 aa17■□□□□ 0.31
SKA3-204ENST00000462482 NT5C3AQ9H0P0 336 aa17■□□□□ 0.31
SKA3-204ENST00000462482 TMEM60Q9H2L4 133 aa17■□□□□ 0.31
SKA3-204ENST00000462482 FZD8Q9H461 694 aa17■□□□□ 0.31
SKA3-204ENST00000462482 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17■□□□□ 0.31
SKA3-204ENST00000462482 EPS15L1Q9UBC2 864 aa17■□□□□ 0.31
SKA3-204ENST00000462482 ZDBF2Q9HCK1 2354 aa17■□□□□ 0.31
SKA3-204ENST00000462482 MED24O75448 989 aa16.99■□□□□ 0.31
SKA3-204ENST00000462482 PRKCBP05771 671 aa16.99■□□□□ 0.31
SKA3-204ENST00000462482 AOC1P19801 751 aa16.99■□□□□ 0.31
SKA3-204ENST00000462482 RPA1P27694 616 aa16.99■□□□□ 0.31
SKA3-204ENST00000462482 CEP57Q86XR8 500 aa16.99■□□□□ 0.31
SKA3-204ENST00000462482 GSTCDQ8NEC7 633 aa16.99■□□□□ 0.31
SKA3-204ENST00000462482 FEZF2Q8TBJ5 459 aa16.99■□□□□ 0.31
SKA3-204ENST00000462482 RABGGTAQ92696 567 aa16.99■□□□□ 0.31
SKA3-204ENST00000462482 PRKD2Q9BZL6 878 aa16.99■□□□□ 0.31
SKA3-204ENST00000462482 WNT16Q9UBV4 365 aa16.99■□□□□ 0.31
SKA3-204ENST00000462482 NOL7Q9UMY1 257 aaKnown RBP16.99■□□□□ 0.31
SKA3-204ENST00000462482 CASTOR2A6NHX0 329 aa16.98■□□□□ 0.31
SKA3-204ENST00000462482 PROB1E7EW31 1015 aa16.98■□□□□ 0.31
SKA3-204ENST00000462482 WNT7AO00755 349 aa16.98■□□□□ 0.31
SKA3-204ENST00000462482 ZMYND10O75800 440 aa16.98■□□□□ 0.31
SKA3-204ENST00000462482 CFHP08603 1231 aa16.98■□□□□ 0.31
SKA3-204ENST00000462482 RPL17P18621 184 aaKnown RBP16.98■□□□□ 0.31
SKA3-204ENST00000462482 CYP11B2P19099 503 aa16.98■□□□□ 0.31
SKA3-204ENST00000462482 MUTP22033 750 aa16.98■□□□□ 0.31
SKA3-204ENST00000462482 NAMPTP43490 491 aa16.98■□□□□ 0.31
SKA3-204ENST00000462482 RBM25P49756 843 aaKnown RBP16.98■□□□□ 0.31
SKA3-204ENST00000462482 EFNA5P52803 228 aa16.98■□□□□ 0.31
SKA3-204ENST00000462482 ZNF174Q15697 407 aa16.98■□□□□ 0.31
SKA3-204ENST00000462482 FAM171A1Q5VUB5 890 aa16.98■□□□□ 0.31
SKA3-204ENST00000462482 POTEGQ6S5H5 508 aa16.98■□□□□ 0.31
SKA3-204ENST00000462482 GET4Q7L5D6 327 aaPredicted RBP16.98■□□□□ 0.31
SKA3-204ENST00000462482 FAM184AQ8NB25 1140 aa16.98■□□□□ 0.31
SKA3-204ENST00000462482 ZNF707Q96C28 371 aaPredicted RBP16.98■□□□□ 0.31
SKA3-204ENST00000462482 LLPHQ9BRT6 129 aaKnown RBP16.98■□□□□ 0.31
SKA3-204ENST00000462482 FOXP1Q9H334 677 aaPredicted RBP16.98■□□□□ 0.31
SKA3-204ENST00000462482 PDZD7Q9H5P4 517 aa16.98■□□□□ 0.31
SKA3-204ENST00000462482 SNTG2Q9NY99 539 aa16.98■□□□□ 0.31
SKA3-204ENST00000462482 LIMCH1Q9UPQ0 1083 aa16.98■□□□□ 0.31
SKA3-204ENST00000462482 STK24Q9Y6E0 443 aa16.98■□□□□ 0.31
SKA3-204ENST00000462482 ACKR2O00590 384 aa16.97■□□□□ 0.31
SKA3-204ENST00000462482 RECQL4O94761 1208 aa16.97■□□□□ 0.31
SKA3-204ENST00000462482 CCT6AP40227 531 aaKnown RBP16.97■□□□□ 0.31
SKA3-204ENST00000462482 NBL1P41271 181 aa16.97■□□□□ 0.31
SKA3-204ENST00000462482 HMGN5P82970 282 aaKnown RBP16.97■□□□□ 0.31
SKA3-204ENST00000462482 PSMD5Q16401 504 aa16.97■□□□□ 0.31
SKA3-204ENST00000462482 DCAF4L1Q3SXM0 396 aa16.97■□□□□ 0.31
SKA3-204ENST00000462482 TTC38Q5R3I4 469 aa16.97■□□□□ 0.31
SKA3-204ENST00000462482 CWF19L1Q69YN2 538 aaKnown RBP16.97■□□□□ 0.31
SKA3-204ENST00000462482 LILRA6Q6PI73 481 aa16.97■□□□□ 0.31
SKA3-204ENST00000462482 PRSS55Q6UWB4 352 aaPredicted RBP16.97■□□□□ 0.31
SKA3-204ENST00000462482 CCDC83Q8IWF9 413 aa16.97■□□□□ 0.31
SKA3-204ENST00000462482 HASPINQ8TF76 798 aa16.97■□□□□ 0.31
SKA3-204ENST00000462482 PIK3R5Q8WYR1 880 aa16.97■□□□□ 0.31
SKA3-204ENST00000462482 KIFAP3Q92845 792 aa16.97■□□□□ 0.31
SKA3-204ENST00000462482 NKD2Q969F2 451 aaPredicted RBP16.97■□□□□ 0.31
SKA3-204ENST00000462482 MYADMQ96S97 322 aa16.97■□□□□ 0.31
SKA3-204ENST00000462482 RAB34Q9BZG1 259 aa16.97■□□□□ 0.31
SKA3-204ENST00000462482 ZFP37Q9Y6Q3 630 aaPredicted RBP16.97■□□□□ 0.31
SKA3-204ENST00000462482 WDR81Q562E7 1941 aa16.96■□□□□ 0.31
SKA3-204ENST00000462482 NARSO43776 548 aaKnown RBP16.96■□□□□ 0.31
SKA3-204ENST00000462482 N4BP1O75113 896 aaKnown RBP16.96■□□□□ 0.31
SKA3-204ENST00000462482 XYLBO75191 536 aa16.96■□□□□ 0.31
SKA3-204ENST00000462482 HNRNPA1P09651 372 aaKnown RBP eCLIP16.96■□□□□ 0.31
SKA3-204ENST00000462482 SRFP11831 508 aa16.96■□□□□ 0.31
SKA3-204ENST00000462482 FSHRP23945 695 aa16.96■□□□□ 0.31
SKA3-204ENST00000462482 TRAPPC10P48553 1259 aa16.96■□□□□ 0.31
SKA3-204ENST00000462482 RTP2Q5QGT7 225 aa16.96■□□□□ 0.31
SKA3-204ENST00000462482 PPM1LQ5SGD2 360 aa16.96■□□□□ 0.31
SKA3-204ENST00000462482 ERICH6BQ5W0A0 696 aa16.96■□□□□ 0.31
SKA3-204ENST00000462482 NOSTRINQ8IVI9 506 aa16.96■□□□□ 0.31
SKA3-204ENST00000462482 CCDC105Q8IYK2 499 aa16.96■□□□□ 0.31
SKA3-204ENST00000462482 SLC44A3Q8N4M1 653 aa16.96■□□□□ 0.31
SKA3-204ENST00000462482 RSAD2Q8WXG1 361 aa16.96■□□□□ 0.31
SKA3-204ENST00000462482 LRWD1Q9UFC0 647 aa16.96■□□□□ 0.31
SKA3-204ENST00000462482 GDAQ9Y2T3 454 aa16.96■□□□□ 0.31
SKA3-204ENST00000462482 TRIOO75962 3097 aa16.95■□□□□ 0.3
SKA3-204ENST00000462482 TRAPPC3O43617 180 aa16.95■□□□□ 0.3
SKA3-204ENST00000462482 KIF4AO95239 1232 aa16.95■□□□□ 0.3
SKA3-204ENST00000462482 LAMP2P13473 410 aa16.95■□□□□ 0.3
SKA3-204ENST00000462482 NPR3P17342 541 aa16.95■□□□□ 0.3
SKA3-204ENST00000462482 DTWD2Q8NBA8 298 aa16.95■□□□□ 0.3
SKA3-204ENST00000462482 ZSCAN31Q96LW9 406 aaPredicted RBP16.95■□□□□ 0.3
SKA3-204ENST00000462482 PAAF1Q9BRP4 392 aa16.95■□□□□ 0.3
SKA3-204ENST00000462482 CA14Q9ULX7 337 aa16.95■□□□□ 0.3
SKA3-204ENST00000462482 POLIQ9UNA4 740 aa16.95■□□□□ 0.3
SKA3-204ENST00000462482 PRR23AA6NEV1 266 aa16.94■□□□□ 0.3
SKA3-204ENST00000462482 K7ERI5 159 aa16.94■□□□□ 0.3
SKA3-204ENST00000462482 PTGESO14684 152 aa16.94■□□□□ 0.3
SKA3-204ENST00000462482 PI15O43692 258 aa16.94■□□□□ 0.3
SKA3-204ENST00000462482 PAPLNO95428 1278 aa16.94■□□□□ 0.3
SKA3-204ENST00000462482 C8AP07357 584 aa16.94■□□□□ 0.3
SKA3-204ENST00000462482 YARSP54577 528 aaKnown RBP16.94■□□□□ 0.3
SKA3-204ENST00000462482 ANGPT1Q15389 498 aa16.94■□□□□ 0.3
SKA3-204ENST00000462482 ATF7IP2Q5U623 682 aa16.94■□□□□ 0.3
SKA3-204ENST00000462482 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms