RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 MCL1Q07820 350 aa24.99■■□□□ 1.59
CCDC28B-203ENST00000461819 KANK3Q6NY19 840 aa24.99■■□□□ 1.59
CCDC28B-203ENST00000461819 THNSL1Q8IYQ7 743 aa24.99■■□□□ 1.59
CCDC28B-203ENST00000461819 SYCP3Q8IZU3 236 aa24.99■■□□□ 1.59
CCDC28B-203ENST00000461819 P2RX5Q93086 422 aa24.99■■□□□ 1.59
CCDC28B-203ENST00000461819 STRA6Q9BX79 667 aa24.99■■□□□ 1.59
CCDC28B-203ENST00000461819 EXOC1Q9NV70 894 aa24.99■■□□□ 1.59
CCDC28B-203ENST00000461819 INPPL1O15357 1258 aa24.98■■□□□ 1.59
CCDC28B-203ENST00000461819 GADD45BO75293 160 aaPredicted RBP24.98■■□□□ 1.59
CCDC28B-203ENST00000461819 PRR29P0C7W0 189 aa24.98■■□□□ 1.59
CCDC28B-203ENST00000461819 PBX3P40426 434 aa24.98■■□□□ 1.59
CCDC28B-203ENST00000461819 KCNT2Q6UVM3 1135 aa24.98■■□□□ 1.59
CCDC28B-203ENST00000461819 KLHL23Q8NBE8 558 aa24.98■■□□□ 1.59
CCDC28B-203ENST00000461819 TOPORSQ9NS56 1045 aaPredicted RBP24.98■■□□□ 1.59
CCDC28B-203ENST00000461819 PDCD11Q14690 1871 aaKnown RBP24.98■■□□□ 1.59
CCDC28B-203ENST00000461819 ATG2AQ2TAZ0 1938 aa24.97■■□□□ 1.59
CCDC28B-203ENST00000461819 PRPF6O94906 941 aaKnown RBP24.97■■□□□ 1.59
CCDC28B-203ENST00000461819 ALDH7A1P49419 539 aaKnown RBP24.97■■□□□ 1.59
CCDC28B-203ENST00000461819 BCAR1P56945 870 aa24.97■■□□□ 1.59
CCDC28B-203ENST00000461819 KCNA1Q09470 495 aa24.97■■□□□ 1.59
CCDC28B-203ENST00000461819 ADGRE1Q14246 886 aa24.97■■□□□ 1.59
CCDC28B-203ENST00000461819 SLC39A4Q6P5W5 647 aa24.97■■□□□ 1.59
CCDC28B-203ENST00000461819 ENGASEQ8NFI3 743 aa24.97■■□□□ 1.59
CCDC28B-203ENST00000461819 CCDC47Q96A33 483 aaKnown RBP24.97■■□□□ 1.59
CCDC28B-203ENST00000461819 MSTO1Q9BUK6 570 aa24.97■■□□□ 1.59
CCDC28B-203ENST00000461819 NRDE2Q9H7Z3 1164 aa24.97■■□□□ 1.59
CCDC28B-203ENST00000461819 ANKRD63C9JTQ0 380 aa24.96■■□□□ 1.59
CCDC28B-203ENST00000461819 KLRC4O43908 158 aa24.96■■□□□ 1.59
CCDC28B-203ENST00000461819 RPN1P04843 607 aaKnown RBP24.96■■□□□ 1.59
CCDC28B-203ENST00000461819 PPM1AP35813 382 aa24.96■■□□□ 1.59
CCDC28B-203ENST00000461819 EHHADHQ08426 723 aa24.96■■□□□ 1.59
CCDC28B-203ENST00000461819 GRIK3Q13003 919 aa24.96■■□□□ 1.59
CCDC28B-203ENST00000461819 SNW1Q13573 536 aaKnown RBP24.96■■□□□ 1.59
CCDC28B-203ENST00000461819 KMT5BQ4FZB7 885 aa24.96■■□□□ 1.59
CCDC28B-203ENST00000461819 SEZ6Q53EL9 994 aa24.96■■□□□ 1.59
CCDC28B-203ENST00000461819 SLFN12LQ6IEE8 588 aa24.96■■□□□ 1.59
CCDC28B-203ENST00000461819 ZNF280BQ86YH2 543 aa24.96■■□□□ 1.59
CCDC28B-203ENST00000461819 GLIS3Q8NEA6 775 aa24.96■■□□□ 1.59
CCDC28B-203ENST00000461819 ACAP3Q96P50 834 aa24.96■■□□□ 1.59
CCDC28B-203ENST00000461819 HAPLN2Q9GZV7 340 aa24.96■■□□□ 1.59
CCDC28B-203ENST00000461819 TMEM206Q9H813 350 aa24.96■■□□□ 1.59
CCDC28B-203ENST00000461819 ALG13Q9NP73 1137 aaKnown RBP24.96■■□□□ 1.59
CCDC28B-203ENST00000461819 MIOSQ9NXC5 875 aa24.96■■□□□ 1.59
CCDC28B-203ENST00000461819 DNAJB4Q9UDY4 337 aa24.96■■□□□ 1.59
CCDC28B-203ENST00000461819 CARNS1A5YM72 827 aa24.95■■□□□ 1.58
CCDC28B-203ENST00000461819 TISP43B9A030 160 aa24.95■■□□□ 1.58
CCDC28B-203ENST00000461819 EIF3DO15371 548 aaKnown RBP eCLIP24.95■■□□□ 1.58
CCDC28B-203ENST00000461819 LPXNO60711 386 aa24.95■■□□□ 1.58
CCDC28B-203ENST00000461819 KINO60870 393 aaKnown RBP24.95■■□□□ 1.58
CCDC28B-203ENST00000461819 NR1I2O75469 434 aa24.95■■□□□ 1.58
CCDC28B-203ENST00000461819 DDHD2O94830 711 aa24.95■■□□□ 1.58
CCDC28B-203ENST00000461819 ITGB1P05556 798 aa24.95■■□□□ 1.58
CCDC28B-203ENST00000461819 UBE2HP62256 183 aa24.95■■□□□ 1.58
CCDC28B-203ENST00000461819 POSTNQ15063 836 aa24.95■■□□□ 1.58
CCDC28B-203ENST00000461819 KYAT1Q16773 422 aa24.95■■□□□ 1.58
CCDC28B-203ENST00000461819 PTPROQ16827 1216 aa24.95■■□□□ 1.58
CCDC28B-203ENST00000461819 IKZF4Q9H2S9 585 aa24.95■■□□□ 1.58
CCDC28B-203ENST00000461819 SLC39A2Q9NP94 309 aa24.95■■□□□ 1.58
CCDC28B-203ENST00000461819 SPG21Q9NZD8 308 aa24.95■■□□□ 1.58
CCDC28B-203ENST00000461819 STXBP5LQ9Y2K9 1186 aa24.95■■□□□ 1.58
CCDC28B-203ENST00000461819 UBE4BO95155 1302 aa24.94■■□□□ 1.58
CCDC28B-203ENST00000461819 A0A0B4J269 797 aa24.94■■□□□ 1.58
CCDC28B-203ENST00000461819 OGTO15294 1046 aa24.94■■□□□ 1.58
CCDC28B-203ENST00000461819 GRM6O15303 877 aa24.94■■□□□ 1.58
CCDC28B-203ENST00000461819 PRPF40AO75400 957 aaKnown RBP24.94■■□□□ 1.58
CCDC28B-203ENST00000461819 FGF18O76093 207 aa24.94■■□□□ 1.58
CCDC28B-203ENST00000461819 DPYDQ12882 1025 aa24.94■■□□□ 1.58
CCDC28B-203ENST00000461819 MICALL1Q8N3F8 863 aa24.94■■□□□ 1.58
CCDC28B-203ENST00000461819 GSTCDQ8NEC7 633 aa24.94■■□□□ 1.58
CCDC28B-203ENST00000461819 POMGNT1Q8WZA1 660 aa24.94■■□□□ 1.58
CCDC28B-203ENST00000461819 HOOK1Q9UJC3 728 aaKnown RBP24.94■■□□□ 1.58
CCDC28B-203ENST00000461819 PLAGL2Q9UPG8 496 aa24.94■■□□□ 1.58
CCDC28B-203ENST00000461819 NT5C1B-RDH14C9J2C7 533 aa24.93■■□□□ 1.58
CCDC28B-203ENST00000461819 PTGESO14684 152 aa24.93■■□□□ 1.58
CCDC28B-203ENST00000461819 B4GALT3O60512 393 aa24.93■■□□□ 1.58
CCDC28B-203ENST00000461819 CSPG5O95196 566 aa24.93■■□□□ 1.58
CCDC28B-203ENST00000461819 THP07101 528 aa24.93■■□□□ 1.58
CCDC28B-203ENST00000461819 CLTAP09496 248 aa24.93■■□□□ 1.58
CCDC28B-203ENST00000461819 SLC11A1P49279 550 aa24.93■■□□□ 1.58
CCDC28B-203ENST00000461819 PSMD2Q13200 908 aa24.93■■□□□ 1.58
CCDC28B-203ENST00000461819 EPM2AIP1Q7L775 607 aaPredicted RBP24.93■■□□□ 1.58
CCDC28B-203ENST00000461819 SLC39A11Q8N1S5 342 aa24.93■■□□□ 1.58
CCDC28B-203ENST00000461819 SNX27Q96L92 541 aa24.93■■□□□ 1.58
CCDC28B-203ENST00000461819 TIGD1Q96MW7 591 aa24.93■■□□□ 1.58
CCDC28B-203ENST00000461819 GBP4Q96PP9 640 aa24.93■■□□□ 1.58
CCDC28B-203ENST00000461819 TMEM175Q9BSA9 504 aa24.93■■□□□ 1.58
CCDC28B-203ENST00000461819 MTCH2Q9Y6C9 303 aa24.93■■□□□ 1.58
CCDC28B-203ENST00000461819 ANK1P16157 1881 aa24.92■■□□□ 1.58
CCDC28B-203ENST00000461819 GALTP07902 379 aa24.92■■□□□ 1.58
CCDC28B-203ENST00000461819 OR1G1P47890 313 aa24.92■■□□□ 1.58
CCDC28B-203ENST00000461819 KRT17Q04695 432 aa24.92■■□□□ 1.58
CCDC28B-203ENST00000461819 PNOCQ13519 176 aa24.92■■□□□ 1.58
CCDC28B-203ENST00000461819 GLRA4Q5JXX5 417 aa24.92■■□□□ 1.58
CCDC28B-203ENST00000461819 MRPL38Q96DV4 380 aaKnown RBP24.92■■□□□ 1.58
CCDC28B-203ENST00000461819 TMEM169Q96HH4 297 aa24.92■■□□□ 1.58
CCDC28B-203ENST00000461819 LMAN2LQ9H0V9 348 aa24.92■■□□□ 1.58
CCDC28B-203ENST00000461819 CXCL16Q9H2A7 254 aa24.92■■□□□ 1.58
CCDC28B-203ENST00000461819 LMCD1Q9NZU5 365 aa24.92■■□□□ 1.58
CCDC28B-203ENST00000461819 AGO2Q9UKV8 859 aaKnown RBP24.92■■□□□ 1.58
CCDC28B-203ENST00000461819 FAN1Q9Y2M0 1017 aa24.92■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms